Cryptic transmission of SARS-CoV-2 in Washington state

Science. 2020 Oct 30;370(6516):571-575. doi: 10.1126/science.abc0523. Epub 2020 Sep 10.

Abstract

After its emergence in Wuhan, China, in late November or early December 2019, the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus rapidly spread globally. Genome sequencing of SARS-CoV-2 allows the reconstruction of its transmission history, although this is contingent on sampling. We analyzed 453 SARS-CoV-2 genomes collected between 20 February and 15 March 2020 from infected patients in Washington state in the United States. We find that most SARS-CoV-2 infections sampled during this time derive from a single introduction in late January or early February 2020, which subsequently spread locally before active community surveillance was implemented.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bayes Theorem
  • Betacoronavirus / genetics*
  • COVID-19
  • Coronavirus Infections / epidemiology*
  • Coronavirus Infections / transmission*
  • Genome, Viral*
  • Humans
  • Likelihood Functions
  • Pandemics
  • Phylogeny
  • Pneumonia, Viral / epidemiology*
  • Pneumonia, Viral / transmission*
  • SARS-CoV-2
  • Washington / epidemiology