We propose an effective scheme for high-precision three dimensional(3D) atom localization via measuring the population of excited state in a four-level atomic system driven by a probe field and three orthogonal standing-wave fields. In this scheme, the position-dependent multiphoton quantum destructive interference leads to multiphoton excitation of the excited state and enhances the fluorescence emission. We show that adjusting the frequency detuning and phase shifts associated with the standing-wave fields can modify the multiphoton quantum destructive interference and lead to a redistribution of the atoms. The maximal probability of finding the atom at the certain position in one period of the standing-wave fields can be 100% and the highest spatial precision is about 0.02λ.