Novel Virus on Filamentous Arthronema africanum Cyanobacterium

Microb Ecol. 2021 Feb;81(2):454-459. doi: 10.1007/s00248-020-01599-2. Epub 2020 Sep 8.

Abstract

Widely distributed in water environments and in soil, cyanobacteria are hosts of lysogenic or lytic bacterioviruses. A novel, probably lysogenic virus (phage) for which the name Arthronema africanum virus TR020 (Aa-TR020) is proposed, has been isolated from filamentous freshwater cyanobacterium Arthronema africanum. The virus formed turbid plaques on plate culture of A. africanum strain 1980/01 but not on other Arthronema strain and other bacterial species. The genome of Aa-TR020 is linear molecule of dsDNA, 44,805 bp in length with 216 bp long terminal repeats and with G + C content of 46%. Fifty-five genes organized on plus and minus strands were predicted there. The genome size, gene arrangement, and selected protein sequences showed relatedness to Phormidium virus Pf-WMP3 and other viruses known to infect cyanobacteria and classified in the family Podoviridae.

Keywords: Complete sequence; Podophage; Podovirus.

MeSH terms

  • Amino Acid Sequence
  • Bacteriophages / classification
  • Bacteriophages / genetics
  • Bacteriophages / physiology*
  • Base Composition
  • Cyanobacteria / virology*
  • DNA, Viral / genetics
  • Fresh Water / microbiology
  • Genome Size
  • Genome, Viral / genetics
  • Host Specificity
  • Lysogeny
  • Phylogeny
  • Podoviridae / classification
  • Podoviridae / genetics
  • Podoviridae / physiology*
  • Sequence Analysis, DNA
  • Viral Proteins / genetics

Substances

  • DNA, Viral
  • Viral Proteins

Supplementary concepts

  • Arthronema africanum