Protein amino-termini and how to identify them

Expert Rev Proteomics. 2020 Jul-Aug;17(7-8):581-594. doi: 10.1080/14789450.2020.1821657. Epub 2020 Sep 20.

Abstract

Introduction: The N-terminus of a protein can encode several protein features, including its half-live and its localization. As the proteomics field remains dominated by bottom-up approaches and as N-terminal peptides only account for a fraction of all analyzable peptides, there is a need for their enrichment prior to analysis. COFRADIC, TAILS, and the subtiligase method were among the first N-terminomics methods developed, and several variants and novel methods were introduced that often reduce processing time and/or the amount of material required.

Areas covered: We present an overview of how the field of N-terminomics developed, including a discussion of the founding methods, several updates made to these and introduce newer methods such as TMPP-labeling, biotin-based methods besides some necessary improvements in data analysis.

Expert opinion: N-terminomic methods remain being used and improved methods are published however, more efficient use of contemporary mass spectrometers, promising data-independent approaches, and mass spectrometry-free single peptide or protein sequences may threat the N-terminomics field.

Keywords: COFRADIC; TAILS; subtiligase.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Amino Acid Sequence / genetics
  • Chromatography, Liquid
  • Humans
  • Isotope Labeling
  • Peptides / genetics
  • Peptides / isolation & purification*
  • Proteome / genetics*
  • Proteomics / trends*
  • Tandem Mass Spectrometry

Substances

  • Peptides
  • Proteome