Site-specific binding of viral plus single-stranded RNA to replicase-containing open virus-like particles of yeast

Proc Natl Acad Sci U S A. 1988 Jun;85(12):4411-5. doi: 10.1073/pnas.85.12.4411.

Abstract

X double-stranded RNA is a deletion mutant of L-A double-stranded RNA and is encapsidated in viral particles by the L-A-encoded major coat protein. X double-stranded RNA has all the cis sites necessary to be transcribed, encapsidated, and replicated. We have cloned X double-stranded RNA and sequenced it. The complete X double-stranded RNA sequence deduced indicates that the first 25 bases of the X plus-strand 5' end originated from the 5' end of the L-A plus strand and that most, if not all, of the rest comes from the 3' end of the L-A plus strand. The X plus strand made by X double-stranded RNA-containing virus-like particles binds specifically to empty open virus-like particles and is converted by these particles to X double-stranded RNA. RNA transcripts of the X complementary DNA clones and deletion derivatives thereof were made in vitro by T7 and T3 RNA polymerases and tested for specific binding to the virus-like particles. The results suggest that the binding is due to the sequence UUUGGCCAGG, 370 bases upstream from the X plus-strand 3' end. This sequence is also present in the M1 plus strand 140 bases from its 3' end.

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Chromosome Deletion
  • Cloning, Molecular
  • Molecular Sequence Data
  • Mutation
  • Protein Binding
  • RNA Nucleotidyltransferases / metabolism*
  • RNA, Double-Stranded / genetics*
  • RNA, Viral / genetics*
  • RNA, Viral / metabolism
  • RNA-Dependent RNA Polymerase / metabolism*
  • Saccharomyces cerevisiae / genetics*
  • Viruses / genetics*
  • Viruses / metabolism

Substances

  • RNA, Double-Stranded
  • RNA, Viral
  • RNA Nucleotidyltransferases
  • RNA-Dependent RNA Polymerase

Associated data

  • GENBANK/J03234