Short RNA Universal Coding for Topological Transformation Nano-barcoding Application

Chembiochem. 2021 Jan 15;22(2):392-397. doi: 10.1002/cbic.202000477. Epub 2020 Oct 29.

Abstract

With the advent of innovative genomic discovery toolkits such as RT-PCR, genetic information can be quickly decrypted, and this has resulted in significant progress in overcoming diseases. However, RT-PCR has the serious problem of frequent errors, and the demand for a new gene diagnostic system is emerging. Herein, we propose a universal coding system for the effective detection of short single-stranded DNA or RNA by using a topological transformation-based nano-barcoding technique (TNT). Our goal was to develop a dedicated diagnostic device that unifies the other gene groups, thus resulting in minimum testing. In a universal coding system consisting of two separate circulation structures, different gene groups become generalized into specific single genes with the same sequence by a strand-displacement reaction and are then amplified, eventually being quickly detected in one TNT system. Simple gene diagnostic systems like this make high-speed, point-of-care diagnostic technologies, and we are very confident that these will provide clinical gene detection in the near future.

Keywords: EGFR; micro RNA; nano-barcoding; shorter RNA fragments; topological transformation; universal coding.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Humans
  • Point-of-Care Testing*
  • RNA / genetics*
  • Reverse Transcriptase Polymerase Chain Reaction*

Substances

  • RNA