Calcium-Mediated In Vitro Transfection Technique of Oligonucleotides with Broad Chemical Modification Compatibility

Methods Mol Biol. 2020:2176:141-154. doi: 10.1007/978-1-0716-0771-8_10.

Abstract

Oligonucleotide drugs (ODs) have gained increasing attention owing to their promising therapeutic potential. One major obstacle that ODs have been facing is the lack of appropriate in vitro validation systems that can predict in vivo activity and toxicity. We have devised a transfection method called CEM (Ca2+-enrichment method), where the simple enrichment of calcium ion with calcium chloride in culture medium potentiates the activity of various types of naked oligonucleotides including gapmers, siRNA, and phosphorodiamidate morpholino antisense oligonucleotides (PMO) in many cultured cell lines with limited cytotoxicity. We here describe a precise procedure of the method. Besides the benefit of the CEM's predictive power to accurately estimate in vivo activity of ODs of your interest in drug discovery and development settings, this cost-efficient, easy-to-access method can be a robust laboratory technique to modulate gene expressions with ODs with a variety of mechanisms of action.

Keywords: 2′4′-BNA/LNA gapmers; LNA; Naked oligonucleotides; Nanoparticles; Oligonucleotide drugs; Phosphorodiamidate morpholino oligonucleotide; Transfection; siRNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • A549 Cells
  • Animals
  • Base Sequence / physiology
  • Calcium / pharmacology*
  • Cell Culture Techniques
  • Cell Line
  • Cell Membrane Permeability / drug effects*
  • HEK293 Cells
  • HeLa Cells
  • Humans
  • Male
  • Mice
  • Mice, Inbred C57BL
  • Morpholinos / chemistry
  • Morpholinos / genetics
  • Morpholinos / pharmacokinetics
  • Nucleic Acid Conformation / drug effects
  • Oligonucleotides / chemistry*
  • Oligonucleotides / genetics*
  • Oligonucleotides / pharmacokinetics
  • Oligonucleotides, Antisense / chemistry
  • Oligonucleotides, Antisense / genetics
  • Oligonucleotides, Antisense / pharmacokinetics
  • RNA, Small Interfering / chemistry
  • RNA, Small Interfering / genetics
  • RNA, Small Interfering / pharmacokinetics
  • Reverse Transcriptase Polymerase Chain Reaction / methods
  • Transfection / methods*

Substances

  • Morpholinos
  • Oligonucleotides
  • Oligonucleotides, Antisense
  • RNA, Small Interfering
  • Calcium