Determination and evaluation of secondary structure content derived from calcium-induced conformational changes in wild-type and mutant mnemiopsin 2 by synchrotron-based Fourier-transform infrared spectroscopy

Biochim Biophys Acta Proteins Proteom. 2020 Dec;1868(12):140528. doi: 10.1016/j.bbapap.2020.140528. Epub 2020 Aug 25.

Abstract

Mnemiopsin 2 from a luminous ctenophore with two functional EF-hand motifs is a calcium-regulated photoprotein that is responsible for emitting a bright blue bioluminescence upon reacting with coelenterazine and calcium ions in Mnemiopsis leidyi. Synchrotron radiation-based Fourier-transform infrared (SR-FTIR) spectroscopy was applied to analyze the distribution of secondary structures, the conformational changes resulting from calcium binding and the structural stabilities in wild-type mnemiopsin 2, as well as its mutant type that possesses three EF-hand motifs. The distribution of secondary structures of these proteins indicates that mutant apo-mnemiopsin 2 has a more stable secondary structure than the wild-type. Analyses of the SR-FTIR spectra revealed that the conformational changes at the secondary structures of both mnemiopsin 2 depend on the calcium concentrations, such that the most noticeable changes in structures of wild-type and mutant mnemiopsin 2 occur at optimum concentrations 6 and 2 mM of calcium chloride, respectively. The addition of calcium to both proteins increases the proportions of their secondary structures in the amide I and II regions. The major amide I bands in the IR spectra of both mnemiopsin‑calcium complexes shift towards smaller wavenumbers, whereas their main amide II bands are identified at larger wavenumbers.

Keywords: Calcium binding; Conformational changes; EF-hand motif; SR-FTIR spectra; Secondary structures; The amide I and II bands; Wild-type and mutant mnemiopsin 2.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Calcium / chemistry*
  • Hydrogen-Ion Concentration
  • Luminescent Proteins / chemistry*
  • Luminescent Proteins / genetics
  • Mutant Proteins
  • Protein Binding
  • Protein Conformation
  • Protein Interaction Domains and Motifs
  • Protein Structure, Secondary*
  • Solutions
  • Spectroscopy, Fourier Transform Infrared*
  • Structure-Activity Relationship

Substances

  • Luminescent Proteins
  • Mutant Proteins
  • Solutions
  • mnemiopsin
  • Calcium