Genomic profiling of the transcription factor Zfp148 and its impact on the p53 pathway

Sci Rep. 2020 Aug 25;10(1):14156. doi: 10.1038/s41598-020-70824-2.

Abstract

Recent data suggest that the transcription factor Zfp148 represses activation of the tumor suppressor p53 in mice and that therapeutic targeting of the human orthologue ZNF148 could activate the p53 pathway without causing detrimental side effects. We have previously shown that Zfp148 deficiency promotes p53-dependent proliferation arrest of mouse embryonic fibroblasts (MEFs), but the underlying mechanism is not clear. Here, we showed that Zfp148 deficiency downregulated cell cycle genes in MEFs in a p53-dependent manner. Proliferation arrest of Zfp148-deficient cells required increased expression of ARF, a potent activator of the p53 pathway. Chromatin immunoprecipitation showed that Zfp148 bound to the ARF promoter, suggesting that Zfp148 represses ARF transcription. However, Zfp148 preferentially bound to promoters of other transcription factors, indicating that deletion of Zfp148 may have pleiotropic effects that activate ARF and p53 indirectly. In line with this, we found no evidence of genetic interaction between TP53 and ZNF148 in CRISPR and siRNA screen data from hundreds of human cancer cell lines. We conclude that Zfp148 deficiency, by increasing ARF transcription, downregulates cell cycle genes and cell proliferation in a p53-dependent manner. However, the lack of genetic interaction between ZNF148 and TP53 in human cancer cells suggests that therapeutic targeting of ZNF148 may not increase p53 activity in humans.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • CRISPR-Cas Systems
  • Cell Cycle Checkpoints / genetics
  • Cell Cycle Proteins / biosynthesis
  • Cell Cycle Proteins / genetics
  • Cell Division
  • Cell Line
  • Chromatin Immunoprecipitation
  • Cisplatin / toxicity
  • Cyclin-Dependent Kinase Inhibitor p16 / metabolism
  • DNA Damage
  • DNA-Binding Proteins / deficiency
  • DNA-Binding Proteins / genetics*
  • DNA-Binding Proteins / physiology
  • Down-Regulation
  • E2F Transcription Factors / physiology
  • Etoposide / toxicity
  • Fibroblasts
  • Gene Expression Regulation / genetics*
  • Gene Ontology
  • Mice
  • RNA Interference
  • RNA, Small Interfering / genetics
  • Signal Transduction / genetics*
  • Transcription Factors / deficiency
  • Transcription Factors / genetics*
  • Transcription Factors / physiology
  • Tumor Suppressor Protein p53 / physiology*

Substances

  • Cdkn2a protein, mouse
  • Cell Cycle Proteins
  • Cyclin-Dependent Kinase Inhibitor p16
  • DNA-Binding Proteins
  • E2F Transcription Factors
  • RNA, Small Interfering
  • Transcription Factors
  • Trp53 protein, mouse
  • Tumor Suppressor Protein p53
  • Zfp148 protein, mouse
  • Etoposide
  • Cisplatin