AP-3 vesicle uncoating occurs after HOPS-dependent vacuole tethering

EMBO J. 2020 Oct 15;39(20):e105117. doi: 10.15252/embj.2020105117. Epub 2020 Aug 25.

Abstract

Heterotetrameric adapter (AP) complexes cooperate with the small GTPase Arf1 or lipids in cargo selection, vesicle formation, and budding at endomembranes in eukaryotic cells. While most AP complexes also require clathrin as the outer vesicle shell, formation of AP-3-coated vesicles involved in Golgi-to-vacuole transport in yeast has been postulated to depend on Vps41, a subunit of the vacuolar HOPS tethering complex. HOPS has also been identified as the tether of AP-3 vesicles on vacuoles. To unravel this conundrum of a dual Vps41 function, we anchored Vps41 stably to the mitochondrial outer membrane. By monitoring AP-3 recruitment, we now show that Vps41 can tether AP-3 vesicles to mitochondria, yet AP-3 vesicles can form in the absence of Vps41 or clathrin. By proximity labeling and mass spectrometry, we identify the Arf1 GTPase-activating protein (GAP) Age2 at the AP-3 coat and show that tethering, but not fusion at the vacuole can occur without complete uncoating. We conclude that AP-3 vesicles retain their coat after budding and that their complete uncoating occurs only after tethering at the vacuole.

Keywords: AP-3; Arf1 GAP; HOPS; Vps41; vacuole.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • ADP-Ribosylation Factors / genetics
  • ADP-Ribosylation Factors / metabolism*
  • Biological Transport, Active / genetics
  • Casein Kinase I / genetics
  • Casein Kinase I / metabolism
  • Cytoplasmic Vesicles / metabolism*
  • Cytoplasmic Vesicles / ultrastructure
  • GTPase-Activating Proteins / genetics
  • GTPase-Activating Proteins / metabolism*
  • Gene Deletion
  • Golgi Apparatus / metabolism
  • Mass Spectrometry
  • Membrane Fusion
  • Microscopy, Electron
  • Mitochondrial Membranes / metabolism*
  • Mitochondrial Membranes / ultrastructure
  • Saccharomyces cerevisiae / metabolism*
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism*
  • Vacuoles / metabolism*
  • Vacuoles / ultrastructure
  • Vesicular Transport Proteins / genetics
  • Vesicular Transport Proteins / metabolism*

Substances

  • AGE2 protein, S cerevisiae
  • GTPase-Activating Proteins
  • Saccharomyces cerevisiae Proteins
  • VPS41 protein, S cerevisiae
  • Vesicular Transport Proteins
  • Casein Kinase I
  • YCK3 protein, S cerevisiae
  • ADP-Ribosylation Factors