Old yellow enzymes: structures and structure-guided engineering for stereocomplementary bioreduction

Appl Microbiol Biotechnol. 2020 Oct;104(19):8155-8170. doi: 10.1007/s00253-020-10845-z. Epub 2020 Aug 24.

Abstract

Since the first discovery of old yellow enzyme 1 (OYE1) from Saccharomyces pastorianus in 1932, biocatalytic asymmetric reduction of activated alkenes by OYEs has become a valuable reaction in organic synthesis. To access stereocomplementary C=C-bond bioreduction, the mining of novel OYEs and especially the protein engineering of existing OYEs have been performed, which successfully achieved the stereocomplementary reduction in several cases and further raise the potential of applications. In this review, we analyzed the structures, active sites, and substrate recognition of OYEs, which are the bases for their substrate specificity and stereospecificity. Sequence similarity network of OYEs superfamily was also constructed to investigate the scope of characterized OYEs. The structure-guided engineering to switch the stereoselectivity of OYEs and thus access stereocomplementary bioreduction over the last decade (2009-2020) was then reviewed and discussed, which might give new insights into the mining and engineering of related biocatalysts. KEY POINTS: • The sequence similarity network of OYEs superfamily was constructed and annotated. • The structures and active sites of OYEs from different classes were compared. • "Left/right" binding mode was used to explain the stereopreferences of OYEs. • Structure-guided engineering of OYEs to switch their stereoselectivity was reviewed.

Keywords: Biocatalysis; Biocatalytic reduction; Old yellow enzymes; Protein engineering; Stereopreference switch.

Publication types

  • Review

MeSH terms

  • Biocatalysis
  • Catalytic Domain
  • NADPH Dehydrogenase* / metabolism
  • Protein Engineering*
  • Saccharomyces
  • Stereoisomerism
  • Substrate Specificity

Substances

  • NADPH Dehydrogenase

Supplementary concepts

  • Saccharomyces pastorianus