All-atom simulations to studying metallodrugs/target interactions

Curr Opin Chem Biol. 2021 Apr:61:1-8. doi: 10.1016/j.cbpa.2020.07.005. Epub 2020 Aug 8.

Abstract

Metallodrugs are extensively used to treat and diagnose distinct disease types. The unique physical-chemical properties of metal ions offer tantalizing opportunities to tailor effective scaffolds for selectively targeting specific biomolecules. Modern experimental techniques have collected a large body of structural data concerning the interactions of metallodrugs with their biomolecular targets, although being unable to exhaustively assess the molecular basis of their mechanism of action. In this scenario, the complementary use of accurate computational methods allows uncovering the minutiae of metallodrugs/targets interactions and their underlying mechanism of action at an atomic-level of detail. This knowledge is increasingly perceived as an invaluable requirement to rationally devise novel and selective metallodrugs. Building on literature studies, selected largely from the last 2 years, this compendium encompasses a cross-section of the current role, advances, and challenges met by computer simulations to decipher the mechanistic intricacies of prototypical metallodrugs.

Keywords: Cisplatin; Gold drugs; Metallo-drug discovery; Metallo-drugs; Molecular dynamics; QM/MM; Ruthenium drugs.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Antineoplastic Agents / chemistry
  • Antineoplastic Agents / pharmacology
  • Computational Chemistry
  • Coordination Complexes / chemistry
  • Coordination Complexes / pharmacology*
  • Humans
  • Metals / chemistry*
  • Molecular Dynamics Simulation
  • Quantum Theory

Substances

  • Antineoplastic Agents
  • Coordination Complexes
  • Metals