Evolutionary history of the heat shock protein 90 (Hsp90) family of 43 plants and characterization of Hsp90s in Solanum tuberosum

Mol Biol Rep. 2020 Sep;47(9):6679-6691. doi: 10.1007/s11033-020-05722-x. Epub 2020 Aug 11.

Abstract

Heat shock protein 90 genes/proteins (Hsp90s) are related to the stress resistance found in various plant species. These proteins affect the growth and development of plants and have important effects on the plants under various stresses (cold, drought and salt) in the environment. In this study, we identified 334 Hsp90s from 43 plant species, and Hsp90s were found in all species. Phylogenetic tree and conserved domain database analysis of all Hsp90s showed three independent clades. The analysis of motifs, gene duplication events, and the expression data from PGSC website revealed the gene structures, evolution relationships, and expression patterns of the Hsp90s. In addition, analysis of the transcript levels of the 7 Hsp90s in potato (Solanum tuberosum) under low temperature and high temperature stresses showed that these genes were related to the temperature stresses. Especially StHsp90.2 and StHsp90.4, under high or low temperature conditions, the expression levels in leaves, stems, or roots were significantly up-regulated. Our findings revealed the evolution of the Hsp90s, which had guiding significance for further researching the precise functions of the Hsp90s.

Keywords: Abiotic stress; Cold resistance; Heat resistance; Hsp90; Potato (Solanum tuberosum).

MeSH terms

  • Amino Acid Sequence
  • Cold-Shock Response / genetics
  • Droughts
  • Evolution, Molecular
  • Gene Duplication
  • Gene Expression Profiling
  • Gene Expression Regulation, Plant / genetics*
  • Gene Ontology
  • Genome, Plant
  • HSP90 Heat-Shock Proteins / genetics*
  • HSP90 Heat-Shock Proteins / metabolism
  • Heat-Shock Response / genetics
  • Nucleotide Motifs
  • Phylogeny
  • Plant Leaves / genetics
  • Plant Leaves / metabolism
  • Plant Proteins / genetics*
  • Plant Proteins / metabolism
  • Plant Roots / genetics
  • Plant Roots / metabolism
  • Plant Stems / genetics
  • Plant Stems / metabolism
  • Sequence Alignment
  • Solanum tuberosum / genetics*
  • Solanum tuberosum / metabolism
  • Stress, Physiological / genetics*

Substances

  • HSP90 Heat-Shock Proteins
  • Plant Proteins