A pan-cancer analysis reveals nonstop extension mutations causing SMAD4 tumour suppressor degradation

Nat Cell Biol. 2020 Aug;22(8):999-1010. doi: 10.1038/s41556-020-0551-7. Epub 2020 Jul 27.

Abstract

Nonstop or stop-loss mutations convert a stop into a sense codon, resulting in translation into the 3' untranslated region as a nonstop extension mutation to the next in-frame stop codon or as a readthrough mutation into the poly-A tail. Nonstop mutations have been characterized in hereditary diseases, but not in cancer genetics. In a pan-cancer analysis, we curated and analysed 3,412 nonstop mutations from 62 tumour entities, generating a comprehensive database at http://NonStopDB.dkfz.de. Six different nonstop extension mutations affected the tumour suppressor SMAD4, extending its carboxy terminus by 40 amino acids. These caused rapid degradation of the SMAD4 mutants via the ubiquitin-proteasome system. A hydrophobic degron signal sequence of ten amino acids within the carboxy-terminal extension was required to induce complete loss of the SMAD4 protein. Thus, we discovered that nonstop mutations can be functionally important in cancer and characterize their loss-of-function impact on the tumour suppressor SMAD4.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Line, Tumor
  • Codon / genetics
  • Databases, Genetic
  • HEK293 Cells
  • Humans
  • Mutation*
  • Neoplasms / genetics*
  • Neoplasms / metabolism
  • Proteolysis
  • Smad4 Protein / genetics*
  • Smad4 Protein / metabolism*

Substances

  • Codon
  • SMAD4 protein, human
  • Smad4 Protein