Postsynthetic On-Column 2' Functionalization of RNA by Convenient Versatile Method

Int J Mol Sci. 2020 Jul 20;21(14):5127. doi: 10.3390/ijms21145127.

Abstract

We report a universal straightforward strategy for the chemical synthesis of modified oligoribonucleotides containing functional groups of different structures at the 2' position of ribose. The on-column synthetic concept is based on the incorporation of two types of commercial nucleotide phosphoramidites containing orthogonal 2'-O-protecting groups, namely 2'-O-thiomorpholine-carbothioate (TC, as "permanent") and 2'-O-tert-butyl(dimethyl)silyl (tBDMS, as "temporary"), to RNA during solid-phase synthesis. Subsequently, the support-bound RNA undergoes selective deprotection and follows postsynthetic 2' functionalization of the naked hydroxyl group. This convenient method to tailor RNA, utilizing the advantages of solid phase approaches, gives an opportunity to introduce site-specifically a wide range of linkers and functional groups. By this strategy, a series of RNAs containing diverse 2' functionalities were synthesized and studied with respect to their physicochemical properties.

Keywords: 2′ hydroxyl; RNA; TC-protecting group; chemical synthesis of RNA; postsynthetic modification; selective deprotection; solid-phase synthesis.

MeSH terms

  • Base Sequence
  • Nucleic Acid Denaturation
  • Oligoribonucleotides / chemical synthesis*
  • Oligoribonucleotides / chemistry
  • Organophosphorus Compounds / chemical synthesis
  • Organophosphorus Compounds / chemistry
  • RNA / chemical synthesis*
  • RNA / chemistry
  • Solid-Phase Synthesis Techniques / methods*

Substances

  • Oligoribonucleotides
  • Organophosphorus Compounds
  • phosphoramidite
  • RNA