GC Content-Associated Sequencing Bias Caused by Library Preparation Method May Infrequently Affect Salmonella Serotype Prediction Using SeqSero2

Appl Environ Microbiol. 2020 Sep 1;86(18):e00614-20. doi: 10.1128/AEM.00614-20. Print 2020 Sep 1.

Authors

Shaoting Li¹, Shaokang Zhang¹, Xiangyu Deng²

Affiliations

¹ Center for Food Safety, University of Georgia, Griffin, Georgia, USA.
² Center for Food Safety, University of Georgia, Griffin, Georgia, USA xdeng@uga.edu.

No abstract available

Keywords: Nextera XT; Salmonella; SeqSero2; low GC; sequencing bias; serotype; version control.

Publication types

Letter
Comment

MeSH terms

Base Composition
Gene Library
Salmonella* / genetics
Serogroup
Serotyping