Association between detectable SARS-COV-2 RNA in anal swabs and disease severity in patients with coronavirus disease 2019

J Med Virol. 2021 Feb;93(2):794-802. doi: 10.1002/jmv.26307. Epub 2020 Jul 27.

Abstract

Background: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA was found in the intestines and feces, but its clinical significance is not completely clear. We aim to characterize the longitudinal test results of SARS-CoV-2 RNA in anal swabs and to explore the association with disease severity.

Methods: We included laboratory-confirmed coronavirus disease 2019 (COVID-19) patients, who were hospitalized in Guangzhou Eighth People's Hospital and excluded those who had not received anal swabs for SARS-COV-2 RNA testing. Epidemiological, clinical, and laboratory data were obtained. Throat swabs and anal swabs were collected periodically for SARS-COV-2 RNA detection.

Results: Two hundred and seventeen eligible patients (median aged 50 years, 50.2% were females) were analyzed. 21.2% (46/217) of the patients were detected with SARS-CoV-2 RNA in anal swabs. The duration of viral RNA was longer, but the viral load was lower in anal swabs than throat swabs in the early stage of the disease. During a median follow-up of 20 days, 30 (13.8%) patients were admitted to the intensive care unit (ICU) for high-flow nasal cannula or higher-level oxygen support measures to correct hypoxemia. Detectable viral RNA in anal swabs (adjusted hazard ratio [aHR], 2.50; 95% confidence interval [CI], 1.20-5.24), increased C-reactive protein (aHR, 3.14; 95% CI, 1.35-7.32) and lymphocytopenia (aHR, 3.12; 95% CI, 1.46-6.67) were independently associated with ICU admission. The cumulative incidence of ICU admission was higher among patients with detectable viral RNA in anal swabs (26.3% vs 10.7%, P = .006).

Conclusion: Detectable SARS-CoV-2 RNA in the digestive tract was a potential warning indicator of severe disease.

Keywords: COVID-19; SARS-CoV-2 RNA; anal swab; disease severity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Anal Canal / virology*
  • Antiviral Agents / therapeutic use
  • C-Reactive Protein / metabolism
  • COVID-19 / diagnosis*
  • COVID-19 / pathology
  • COVID-19 / therapy
  • COVID-19 / virology
  • COVID-19 Testing
  • Chloroquine / therapeutic use
  • Female
  • Hospitalization / statistics & numerical data
  • Humans
  • Indoles / therapeutic use
  • Intensive Care Units / statistics & numerical data
  • Lymphopenia / diagnosis*
  • Lymphopenia / pathology
  • Lymphopenia / therapy
  • Lymphopenia / virology
  • Male
  • Middle Aged
  • Oseltamivir / therapeutic use
  • Pharynx / virology
  • RNA, Viral / genetics*
  • Retrospective Studies
  • SARS-CoV-2 / genetics*
  • SARS-CoV-2 / pathogenicity
  • Severity of Illness Index
  • Viral Load / drug effects

Substances

  • Antiviral Agents
  • Indoles
  • RNA, Viral
  • Oseltamivir
  • Chloroquine
  • C-Reactive Protein
  • umifenovir