Single-Cell and Population Transcriptomics Reveal Pan-epithelial Remodeling in Type 2-High Asthma

Cell Rep. 2020 Jul 7;32(1):107872. doi: 10.1016/j.celrep.2020.107872.

Abstract

The type 2 cytokine-high asthma endotype (T2H) is characterized by IL-13-driven mucus obstruction of the airways. To further investigate this incompletely understood pathobiology, we characterize IL-13 effects on human airway epithelial cell cultures using single-cell RNA sequencing, finding that IL-13 generates a distinctive transcriptional state for each cell type. Specifically, we discover a mucus secretory program induced by IL-13 in all cell types which converts both mucus and defense secretory cells into a metaplastic state with emergent mucin production and secretion, while leading to ER stress and cell death in ciliated cells. The IL-13-remodeled epithelium secretes a pathologic, mucin-imbalanced, and innate immunity-depleted proteome that arrests mucociliary motion. Signatures of IL-13-induced cellular remodeling are mirrored by transcriptional signatures characteristic of the nasal airway epithelium within T2H versus T2-low asthmatic children. Our results reveal the epithelium-wide scope of T2H asthma and present candidate therapeutic targets for restoring normal epithelial function.

Keywords: GALA; RNA-seq; air-liquid interface; ciliary beat frequency; disease; lung; proteomics; secretome; single cell sequencing; type 2 inflammation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Asthma / genetics*
  • Biological Transport / drug effects
  • Cellular Reprogramming / drug effects
  • Child
  • Cilia / drug effects
  • Cilia / metabolism
  • Down-Regulation / drug effects
  • Endoplasmic Reticulum Stress / drug effects
  • Epithelium / drug effects
  • Epithelium / metabolism*
  • Humans
  • Immunity, Innate / drug effects
  • Interferons / metabolism
  • Interleukin-13 / pharmacology
  • Metaplasia
  • Mucus / metabolism
  • Single-Cell Analysis*
  • Transcriptome / drug effects
  • Transcriptome / genetics*

Substances

  • Interleukin-13
  • Interferons