Structure of the yeast Swi/Snf complex in a nucleosome free state

Nat Commun. 2020 Jul 7;11(1):3398. doi: 10.1038/s41467-020-17229-x.

Abstract

SWI/SNF remodelers play a key role in regulating chromatin architecture and gene expression. Here, we report the cryo-EM structure of the Saccharomyces cerevisiae Swi/Snf complex in a nucleosome-free state. The structure consists of a stable triangular base module and a flexible Arp module. The conserved subunits Swi1 and Swi3 form the backbone of the complex and closely interact with other components. Snf6, which is specific for yeast Swi/Snf complex, stabilizes the binding of the ATPase-containing subunit Snf2 to the base module. Comparison of the yeast Swi/Snf and RSC complexes reveals conserved structural features that govern the assembly and function of these two subfamilies of chromatin remodelers. Our findings complement those from recent structures of the yeast and human chromatin remodelers and provide further insights into the assembly and function of the SWI/SNF remodelers.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphatases / chemistry*
  • Chromatin / chemistry*
  • Chromosomal Proteins, Non-Histone / chemistry*
  • Cryoelectron Microscopy
  • DNA-Binding Proteins / chemistry
  • Humans
  • Nuclear Proteins / chemistry*
  • Nucleosomes
  • Protein Binding
  • Protein Domains
  • Repressor Proteins / chemistry*
  • Saccharomyces cerevisiae / chemistry
  • Saccharomyces cerevisiae Proteins / chemistry*
  • Transcription Factors / chemistry*

Substances

  • BANF1 protein, human
  • Chromatin
  • Chromosomal Proteins, Non-Histone
  • DNA-Binding Proteins
  • Nuclear Proteins
  • Nucleosomes
  • RIM101 protein, S cerevisiae
  • Repressor Proteins
  • SWI1 protein, S cerevisiae
  • SWI3 protein, S cerevisiae
  • Saccharomyces cerevisiae Proteins
  • Transcription Factors
  • Adenosine Triphosphatases
  • SNF2 protein, S cerevisiae