Novel South African Rare Actinomycete Kribbella speibonae Strain SK5: A Prolific Producer of Hydroxamate Siderophores Including New Dehydroxylated Congeners

Molecules. 2020 Jun 29;25(13):2979. doi: 10.3390/molecules25132979.

Abstract

In this paper, we report on the chemistry of the rare South African Actinomycete Kribbella speibonae strain SK5, a prolific producer of hydroxamate siderophores and their congeners. Two new analogues, dehydroxylated desferrioxamines, speibonoxamine 1 and desoxy-desferrioxamine D1 2, have been isolated, together with four known hydroxamates, desferrioxamine D1 3, desferrioxamine B 4, desoxy-nocardamine 5 and nocardamine 6, and a diketopiperazine (DKP) 7. The structures of 1-7 were characterized by the analysis of HRESIMS and 1D and 2D NMR data, as well as by comparison with the relevant literature. Three new dehydroxy desferrioxamine derivatives 8-10 were tentatively identified in the molecular network of K. speibonae strain SK5 extracts, and structures were proposed based on their MS/MS fragmentation patterns. A plausible spb biosynthetic pathway was proposed. To the best of our knowledge, this is the first report of the isolation of desferrioxamines from the actinobacterial genus Kribbella.

Keywords: Kribbella; hydroxamate; mass spectrometry; molecular networking; siderophore; speibonoxamine.

MeSH terms

  • Actinobacteria / chemistry*
  • Actinobacteria / genetics
  • Actinomycetales / classification
  • Actinomycetales / genetics
  • Deferoxamine / chemistry
  • Deferoxamine / metabolism
  • Genes, Bacterial / genetics
  • Hydroxamic Acids / chemistry
  • Hydroxamic Acids / isolation & purification*
  • Iron / metabolism
  • RNA, Ribosomal, 16S / genetics*
  • Siderophores / chemistry
  • Siderophores / isolation & purification*
  • Tandem Mass Spectrometry

Substances

  • Hydroxamic Acids
  • RNA, Ribosomal, 16S
  • Siderophores
  • Iron
  • Deferoxamine