Virtual Screening Identifies Chebulagic Acid as an Inhibitor of the M2(S31N) Viral Ion Channel and Influenza A Virus

Molecules. 2020 Jun 24;25(12):2903. doi: 10.3390/molecules25122903.

Abstract

The increasing prevalence of drug-resistant influenza viruses emphasizes the need for new antiviral countermeasures. The M2 protein of influenza A is a proton-gated, proton-selective ion channel, which is essential for influenza replication and an established antiviral target. However, all currently circulating influenza A virus strains are now resistant to licensed M2-targeting adamantane drugs, primarily due to the widespread prevalence of an M2 variant encoding a serine to asparagine 31 mutation (S31N). To identify new chemical leads that may target M2(S31N), we performed a virtual screen of molecules from two natural product libraries and identified chebulagic acid as a candidate M2(S31N) inhibitor and influenza antiviral. Chebulagic acid selectively restores growth of M2(S31N)-expressing yeast. Molecular modeling also suggests that chebulagic acid hydrolysis fragments preferentially interact with the highly-conserved histidine residue within the pore of M2(S31N) but not adamantane-sensitive M2(S31). In contrast, chebulagic acid inhibits in vitro influenza A replication regardless of M2 sequence, suggesting that it also acts on other influenza targets. Taken together, results implicate chebulagic acid and/or its hydrolysis fragments as new chemical leads for M2(S31N) and influenza-directed antiviral development.

Keywords: M2; antivirals; chebulagic acid; influenza A virus; natural products; viroporin.

MeSH terms

  • Amantadine / chemistry
  • Amantadine / pharmacology
  • Animals
  • Antiviral Agents / chemistry
  • Antiviral Agents / pharmacology*
  • Benzopyrans / pharmacology*
  • Dogs
  • Drug Evaluation, Preclinical / methods*
  • Drug Resistance, Viral / drug effects
  • Drug Resistance, Viral / genetics
  • Glucosides / pharmacology*
  • Histidine / chemistry
  • Influenza A virus / drug effects*
  • Influenza A virus / physiology
  • Madin Darby Canine Kidney Cells
  • Models, Molecular
  • Molecular Docking Simulation
  • Molecular Dynamics Simulation
  • Mutation
  • Saccharomyces cerevisiae / drug effects
  • Saccharomyces cerevisiae / genetics
  • Viral Matrix Proteins / antagonists & inhibitors*
  • Viral Matrix Proteins / chemistry
  • Viral Matrix Proteins / genetics
  • Virus Replication / drug effects

Substances

  • Antiviral Agents
  • Benzopyrans
  • Glucosides
  • M2 protein, Influenza A virus
  • Viral Matrix Proteins
  • chebulagic acid
  • Histidine
  • Amantadine