A circular RNA map for human induced pluripotent stem cells of foetal origin

EBioMedicine. 2020 Jul:57:102848. doi: 10.1016/j.ebiom.2020.102848. Epub 2020 Jun 20.

Abstract

Background: Adult skin fibroblasts represent the most common starting cell type used to generate human induced pluripotent stem cells (F-hiPSC) for clinical studies. Yet, a foetal source would offer unique advantages, primarily the absence of accumulated somatic mutations. Herein, we generated hiPSC from cord blood multipotent mesenchymal stromal cells (MSC-hiPSC) and compared them with F-hiPSC. Assessment of the full activation of the pluripotency gene regulatory network (PGRN) focused on circular RNA (circRNA), recently proposed to participate in the control of pluripotency.

Methods: Reprogramming was achieved by a footprint-free strategy. Self-renewal and pluripotency of cord blood MSC-hiPSC were investigated in vitro and in vivo, compared to parental MSC, to embryonic stem cells and to F-hiPSC. High-throughput array-based approaches and bioinformatics analyses were applied to address the PGRN.

Findings: Cord blood MSC-hiPSC successfully acquired a complete pluripotent identity. Functional comparison with F-hiPSC showed no differences in terms of i) generation of mesenchymal-like derivatives, ii) their subsequent adipogenic, osteogenic and chondrogenic commitment, and iii) their hematopoietic support ability. At the transcriptional level, specific subsets of mRNA, miRNA and circRNA (n = 4,429) were evidenced, casting a further layer of complexity on the PGRN regulatory crosstalk.

Interpretation: A circRNA map of transcripts associated to naïve and primed pluripotency is provided for hiPSC of clinical-grade foetal origin, offering insights on still unreported regulatory circuits of the PGRN to consider for the optimization and development of efficient differentiation protocols for clinical translation.

Funding: This research was funded by Ricerca Corrente 2012-2018 by the Italian Ministry of Health.

Keywords: Cord blood; Multipotent mesenchymal stromal cells; PGRN; circRNA; hiPSC; miRNA.

MeSH terms

  • Cell Differentiation / genetics*
  • Cells, Cultured
  • Cellular Reprogramming / genetics*
  • Fetal Blood / cytology*
  • Fetal Blood / metabolism
  • Fetus / cytology
  • Fibroblasts / cytology
  • Fibroblasts / metabolism
  • Gene Expression Regulation, Developmental / genetics
  • Gene Regulatory Networks / genetics
  • Humans
  • Induced Pluripotent Stem Cells / cytology*
  • Mesenchymal Stem Cells / cytology*
  • Mesenchymal Stem Cells / metabolism
  • MicroRNAs / genetics
  • Mutation / genetics
  • Osteogenesis / genetics
  • RNA, Circular / genetics
  • RNA, Messenger / genetics

Substances

  • MicroRNAs
  • RNA, Circular
  • RNA, Messenger