Genetic Variants of the PLCXD3 Gene Are Associated with Risk of Metabolic Syndrome in the Emirati Population

Genes (Basel). 2020 Jun 18;11(6):665. doi: 10.3390/genes11060665.

Abstract

Phosphatidylinositol-specific phospholipase C X domain 3 (PLCXD3) has been shown to influence pancreatic β-cell function by disrupting insulin signaling. Herein, we investigated two genetic variants in the PLCXD3 gene in relation to type 2 diabetes (T2D) or metabolic syndrome (MetS) in the Emirati population. In total, 556 adult Emirati individuals (306 T2D and 256 controls) were genotyped for two PLCXD3 variants (rs319013 and rs9292806) using TaqMan genotyping assays. The frequency distribution of minor homozygous CC genotype of rs9292806 and GG genotype of rs319013 were significantly higher in subjects with MetS compared to Non-MetS (p < 0.01). The minor homozygous rs9292806-CC and rs319013-GG genotypes were significantly associated with increased risk of MetS (adj. OR 2.92; 95% CI 1.61-5.3; p < 0.001) (adj. OR 2.62; 95% CI 1.42-4.83; p = 0.002), respectively. However, no associations were detected with T2D. In healthy participants, the homozygous minor genotypes of both rs9292806 and rs319013 were significantly higher fasting glucose (adj. p < 0.005), HbA1c (adj. p < 0.005) and lower HDL-cholesterol (adj. p < 0.05) levels. Data from T2D Knowledge Portal database disclosed a nominal association of rs319013 and rs9292806 with T2D and components of MetS. Bioinformatics prediction analysis showed a deleterious effect of rs9292806 on the regulatory regions of PLCXD3. In conclusion, this study identifies rs319013 and rs9292806 variants of PLCXD3 as additional risk factors for MetS in the Emirati population.

Keywords: BMI; CJD; HbA1c; LDL; MAF; MetS; SBP; body mass index; diastolic blood pressure; metabolic syndrome; minor allele frequency; phosphatidylinositol-specific phospholipase C X domain; single-nucleotide polymorphism; triglycerides; type 2 diabetes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Alleles
  • Body Mass Index
  • Diabetes Mellitus, Type 2 / genetics*
  • Diabetes Mellitus, Type 2 / pathology
  • Female
  • Genetic Association Studies
  • Genetic Predisposition to Disease*
  • Genetics, Population*
  • Genotype
  • Glycated Hemoglobin / genetics
  • Humans
  • Male
  • Metabolic Syndrome / genetics*
  • Metabolic Syndrome / pathology
  • Middle Aged
  • Phosphoinositide Phospholipase C / genetics*
  • Polymorphism, Single Nucleotide / genetics
  • Risk Factors

Substances

  • Glycated Hemoglobin A
  • hemoglobin A1c protein, human
  • Phosphoinositide Phospholipase C
  • phosphatidylinositol specific phospholipase C, human