Molecular typing and genomic characteristic of human adenoviruses in Datong, Northern China

J Med Virol. 2020 Dec;92(12):3111-3118. doi: 10.1002/jmv.26203. Epub 2020 Jul 11.

Abstract

The molecular prevalence of human adenoviruses (HAdVs) in Datong city and molecular evolution of HAdV-C species is still obscure. Here, we explored the molecular prevalence of HAdVs by simultaneous sequencing of hexon and fiber. Then, the penton gene fragments of HAdV-C species were determined by sequencing. Finally, genomic and proteotyping analysis were performed for exploration of molecular evolution of unique HAdV-6. Our results showed that dominant molecular types of HAdVs were HAdV-3, HAdV-2, and HAdV-1 based on the hexon and fiber genotype. Among H2F2 isolates, P1H2F2 was most common, followed by P2H2F2 and HAdV-89. The clinical symptoms of HAdV-1 or HAdV-2 infected patients were more severe than HAdV-3 infected patients, the prognosis of HAdV-1, HAdV-2, and HAdV-3 infected patients was indifference. Genomic and proteotyping analysis demonstrated that DT15 was different from HAdV-6 prototype, with high-discrepant sequences localized in the E3 region. In conclusion, HAdV-1 and HAdV-2 have a high affinity to infect younger children and cause more severe symptoms than HAdV-3. The E3 gene of HAdV-C species was considered as highly recombination and mutation region.

Keywords: adenovirus; epidemiology; evolution; virus classification.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenovirus Infections, Human* / epidemiology
  • Adenovirus Infections, Human* / virology
  • Adenoviruses, Human* / classification
  • Adenoviruses, Human* / genetics
  • Adenoviruses, Human* / isolation & purification
  • Adolescent
  • Capsid Proteins* / genetics
  • Child
  • Child, Preschool
  • China / epidemiology
  • DNA, Viral / genetics
  • Evolution, Molecular
  • Female
  • Genome, Viral* / genetics
  • Genotype*
  • Humans
  • Infant
  • Male
  • Molecular Epidemiology
  • Molecular Sequence Data
  • Molecular Typing*
  • Phylogeny
  • Prevalence
  • Sequence Analysis, DNA

Substances

  • Capsid Proteins
  • hexon capsid protein, Adenovirus
  • DNA, Viral
  • penton protein, adenovirus