Intragenic recruitment of NF-κB drives splicing modifications upon activation by the oncogene Tax of HTLV-1

Nat Commun. 2020 Jun 16;11(1):3045. doi: 10.1038/s41467-020-16853-x.

Abstract

Chronic NF-κB activation in inflammation and cancer has long been linked to persistent activation of NF-κB-responsive gene promoters. However, NF-κB factors also massively bind to gene bodies. Here, we demonstrate that recruitment of the NF-κB factor RELA to intragenic regions regulates alternative splicing upon NF-κB activation by the viral oncogene Tax of HTLV-1. Integrative analyses of RNA splicing and chromatin occupancy, combined with chromatin tethering assays, demonstrate that DNA-bound RELA interacts with and recruits the splicing regulator DDX17, in an NF-κB activation-dependent manner. This leads to alternative splicing of target exons due to the RNA helicase activity of DDX17. Similar results were obtained upon Tax-independent NF-κB activation, indicating that Tax likely exacerbates a physiological process where RELA provides splice target specificity. Collectively, our results demonstrate a physical and direct involvement of NF-κB in alternative splicing regulation, which significantly revisits our knowledge of HTLV-1 pathogenesis and other NF-κB-related diseases.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alternative Splicing / physiology*
  • DEAD-box RNA Helicases / genetics
  • DEAD-box RNA Helicases / metabolism
  • Gene Expression Regulation
  • Gene Products, tax / genetics
  • Gene Products, tax / metabolism*
  • Human T-lymphotropic virus 1 / pathogenicity
  • Humans
  • Leukocytes, Mononuclear / virology
  • NF-kappa B / genetics
  • NF-kappa B / metabolism*
  • Oncogenes
  • Transcription Factor RelA / metabolism

Substances

  • Gene Products, tax
  • NF-kappa B
  • RELA protein, human
  • Transcription Factor RelA
  • tax protein, Human T-lymphotrophic virus 1
  • DDX17 protein, human
  • Ddx5 protein, human
  • DEAD-box RNA Helicases