Sediment transport calculations are used globally in the numerical models that coastal managers, scientists and engineers use to assess and forecast coastal change. Most of the existing sediment transport equations were defined based on experimental results using siliciclastic sands. Yet these equations are applied to all types of sand, including carbonate sands that have different characteristics and therefore, settling behaviour. A rigorous management of the transport of carbonate sand is essential for the present and future management of sedimentary features in coral reefs such as sandy beaches or reef islands. Here we present a new approach to estimating the drag coefficient of carbonate sands that considers both friction and pressure. Based on our new method, the calculated drag coefficients explain the great variability in settling velocities of carbonate sand observed in nature (from 0.025 m/s to 0.364 m/s in our database). Using our formula, we demonstrate that even small differences in the settling velocity obtained with the new drag coefficient can lead to substantial changes in sediment transport and call for an update of numerical models.