Vesicle transport and growth dynamics in Aspergillus niger: Microscale modeling of secretory vesicle flow and centerline extraction from confocal fluorescent data

Biotechnol Bioeng. 2020 Sep;117(9):2875-2886. doi: 10.1002/bit.27452. Epub 2020 Jun 27.

Abstract

In this paper, we present a mathematical model to describe filamentous fungal growth based on intracellular secretory vesicles (SVs), which transport cell wall components to the hyphal tip. Vesicular transport inside elongating hyphae is modeled as an advection-diffusion-reaction equation with a moving boundary, transformed into fixed coordinates, and discretized using a high-order weighted essentially nonoscillatory discretization scheme. The model describes the production and the consumption of SVs with kinetic functions. Simulations are subsequently compared against distributions of SVs visualized by enhanced green fluorescent protein in young Aspergillus niger hyphae after germination. Intensity profile data are obtained using an algorithm scripted in ImageJ that extracts mean intensity distributions from 3D time-lapse confocal measurement data. Simulated length growth is in good agreement with the experimental data. Our simulations further show that a decrease of effective vesicle transport velocity towards the tip can explain the observed tip accumulation of SVs.

Keywords: Aspergillus niger; filamentous fungi; germ tube; modeling; protein secretion; secretory vesicle.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Aspergillus niger* / cytology
  • Aspergillus niger* / metabolism
  • Biological Transport / physiology*
  • Green Fluorescent Proteins / analysis
  • Green Fluorescent Proteins / metabolism
  • Hyphae / metabolism
  • Image Processing, Computer-Assisted
  • Microscopy, Confocal
  • Models, Biological
  • Secretory Vesicles / metabolism*

Substances

  • enhanced green fluorescent protein
  • Green Fluorescent Proteins