Methanol-Essential Growth of Corynebacterium glutamicum: Adaptive Laboratory Evolution Overcomes Limitation due to Methanethiol Assimilation Pathway

Int J Mol Sci. 2020 May 20;21(10):3617. doi: 10.3390/ijms21103617.

Abstract

Methanol is a sustainable substrate for biotechnology. In addition to natural methylotrophs, metabolic engineering has gained attention for transfer of methylotrophy. Here, we engineered Corynebacterium glutamicum for methanol-dependent growth with a sugar co-substrate. Heterologous expression of genes for methanol dehydrogenase from Bacillus methanolicus and of ribulose monophosphate pathway genes for hexulose phosphate synthase and isomerase from Bacillus subtilis enabled methanol-dependent growth of mutants carrying one of two independent metabolic cut-offs, i.e., either lacking ribose-5-phosphate isomerase or ribulose-5-phosphate epimerase. Whole genome sequencing of strains selected by adaptive laboratory evolution (ALE) for faster methanol-dependent growth was performed. Subsequently, three mutations were identified that caused improved methanol-dependent growth by (1) increased plasmid copy numbers, (2) enhanced riboflavin supply and (3) reduced formation of the methionine-analogue O-methyl-homoserine in the methanethiol pathway. Our findings serve as a foundation for the engineering of C. glutamicum to unleash the full potential of methanol as a carbon source in biotechnological processes.

Keywords: adaptive laboratory evolution; isotopic labeling; metabolic engineering; methanol; ribulose monophosphate pathway; synthetic methylotrophy.

MeSH terms

  • Alcohol Oxidoreductases / genetics
  • Alcohol Oxidoreductases / metabolism
  • Aldehyde-Lyases / genetics
  • Aldehyde-Lyases / metabolism
  • Aldose-Ketose Isomerases / genetics
  • Aldose-Ketose Isomerases / metabolism
  • Bacillus subtilis / genetics
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Corynebacterium glutamicum / genetics*
  • Corynebacterium glutamicum / metabolism
  • Directed Molecular Evolution / methods*
  • Industrial Microbiology / methods
  • Metabolic Engineering / methods
  • Methanol / metabolism*
  • Riboflavin / metabolism
  • Ribulosephosphates / metabolism
  • Sulfhydryl Compounds / metabolism*
  • Transgenes

Substances

  • Bacterial Proteins
  • Ribulosephosphates
  • Sulfhydryl Compounds
  • methylmercaptan
  • Alcohol Oxidoreductases
  • alcohol dehydrogenase (acceptor)
  • Aldehyde-Lyases
  • hexose phosphate synthetase
  • Aldose-Ketose Isomerases
  • ribosephosphate isomerase
  • Riboflavin
  • Methanol

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