Gene Signatures of Early Response to Anti-TNF Drugs in Pediatric Inflammatory Bowel Disease

Int J Mol Sci. 2020 May 9;21(9):3364. doi: 10.3390/ijms21093364.

Abstract

Around a 20-30% of inflammatory bowel disease (IBD) patients are diagnosed before they are 18 years old. Anti-TNF drugs can induce and maintain remission in IBD, however, up to 30% of patients do not respond. The aim of the work was to identify markers that would predict an early response to anti-TNF drugs in pediatric patients with IBD. The study population included 43 patients aged <18 years with IBD who started treatment with infliximab or adalimumab. Patients were classified into primary responders (n = 27) and non-responders to anti-TNF therapy (n = 6). Response to treatment could not be analyzed in 10 patients. Response was defined as a decrease in over 15 points in the disease activity indexes from week 0 to week 10 of infliximab treatment or from week 0 to week 26 of adalimumab treatment. The expression profiles of nine genes in total RNA isolated from the whole-blood of pediatric IBD patients taken before biologic administration and after 2 weeks were analyzed using qPCR and the 2-∆∆Ct method. Before initiation and after 2 weeks of treatment the expression of SMAD7 was decreased in patients who were considered as non-responders (p value < 0.05). Changes in expression were also observed for TLR2 at T0 and T2, although that did not reach the level of statistical significance. In addition, the expression of DEFA5 decreased 1.75-fold during the first 2 weeks of anti-TNF treatment in responders, whereas no changes were observed in non-responders. Expression of the SMAD7 gene is a pharmacogenomic biomarker of early response to anti-TNF agents in pediatric IBD. TLR2 and DEFA5 need to be validated in larger studies.

Keywords: Crohn’s disease; adalimumab; biomarker; gene expression; infliximab; ulcerative colitis.

MeSH terms

  • Adalimumab / pharmacology*
  • Adalimumab / therapeutic use
  • Adolescent
  • Anti-Inflammatory Agents / pharmacology*
  • Anti-Inflammatory Agents / therapeutic use
  • Antirheumatic Agents / pharmacology*
  • Antirheumatic Agents / therapeutic use
  • Child
  • Child, Preschool
  • Female
  • Gene Expression Regulation / drug effects
  • Humans
  • Infant
  • Inflammatory Bowel Diseases / blood
  • Inflammatory Bowel Diseases / drug therapy*
  • Inflammatory Bowel Diseases / genetics
  • Infliximab / pharmacology*
  • Infliximab / therapeutic use
  • Male
  • RNA, Messenger / biosynthesis
  • RNA, Messenger / blood
  • RNA, Messenger / genetics
  • Receptors, Tumor Necrosis Factor, Type II / biosynthesis
  • Receptors, Tumor Necrosis Factor, Type II / genetics
  • Smad7 Protein / biosynthesis
  • Smad7 Protein / genetics
  • Toll-Like Receptor 2 / biosynthesis
  • Toll-Like Receptor 2 / genetics
  • Transcriptome / drug effects*
  • Treatment Outcome
  • Triggering Receptor Expressed on Myeloid Cells-1 / biosynthesis
  • Triggering Receptor Expressed on Myeloid Cells-1 / genetics
  • Tumor Necrosis Factor-alpha / antagonists & inhibitors*
  • Tumor Necrosis Factor-alpha / biosynthesis
  • Tumor Necrosis Factor-alpha / genetics
  • alpha-Defensins / biosynthesis
  • alpha-Defensins / genetics

Substances

  • Anti-Inflammatory Agents
  • Antirheumatic Agents
  • DEFA5 protein, human
  • RNA, Messenger
  • Receptors, Tumor Necrosis Factor, Type II
  • SMAD7 protein, human
  • Smad7 Protein
  • TLR2 protein, human
  • TNFRSF1B protein, human
  • TREM1 protein, human
  • Toll-Like Receptor 2
  • Triggering Receptor Expressed on Myeloid Cells-1
  • Tumor Necrosis Factor-alpha
  • alpha-Defensins
  • Infliximab
  • Adalimumab