Plant 22-nt siRNAs mediate translational repression and stress adaptation

Nature. 2020 May;581(7806):89-93. doi: 10.1038/s41586-020-2231-y. Epub 2020 Apr 29.

Abstract

Small interfering RNAs (siRNAs) are essential for proper development and immunity in eukaryotes1. Plants produce siRNAs with lengths of 21, 22 or 24 nucleotides. The 21- and 24-nucleotide species mediate cleavage of messenger RNAs and DNA methylation2,3, respectively, but the biological functions of the 22-nucleotide siRNAs remain unknown. Here we report the identification and characterization of a group of endogenous 22-nucleotide siRNAs that are generated by the DICER-LIKE 2 (DCL2) protein in plants. When cytoplasmic RNA decay and DCL4 are deficient, the resulting massive accumulation of 22-nucleotide siRNAs causes pleiotropic growth disorders, including severe dwarfism, meristem defects and pigmentation. Notably, two genes that encode nitrate reductases-NIA1 and NIA2-produce nearly half of the 22-nucleotide siRNAs. Production of 22-nucleotide siRNAs triggers the amplification of gene silencing and induces translational repression both gene specifically and globally. Moreover, these 22-nucleotide siRNAs preferentially accumulate upon environmental stress, especially those siRNAs derived from NIA1/2, which act to restrain translation, inhibit plant growth and enhance stress responses. Thus, our research uncovers the unique properties of 22-nucleotide siRNAs, and reveals their importance in plant adaptation to environmental stresses.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acclimatization / genetics*
  • Arabidopsis / genetics*
  • Arabidopsis / growth & development
  • Arabidopsis Proteins / genetics
  • Arabidopsis Proteins / metabolism
  • Argonaute Proteins / metabolism
  • Cell Cycle Proteins
  • Gene Expression Regulation, Plant*
  • Gene Silencing
  • Mutation
  • Nitrate Reductase / genetics
  • Plant Diseases / genetics
  • Protein Biosynthesis / genetics*
  • RNA Stability
  • RNA, Messenger / genetics
  • RNA, Plant / genetics*
  • RNA, Small Interfering / biosynthesis
  • RNA, Small Interfering / genetics*
  • Ribonuclease III / metabolism

Substances

  • AGO1 protein, Arabidopsis
  • Arabidopsis Proteins
  • Argonaute Proteins
  • Cell Cycle Proteins
  • RNA, Messenger
  • RNA, Plant
  • RNA, Small Interfering
  • NIA1 protein, Arabidopsis
  • NIA2 protein, Arabidopsis
  • Nitrate Reductase
  • DCL4 protein, Arabidopsis
  • DCL2 protein, Arabidopsis
  • Ribonuclease III