Ionic Coulomb blockade and the determinants of selectivity in the NaChBac bacterial sodium channel

Biochim Biophys Acta Biomembr. 2020 Sep 1;1862(9):183301. doi: 10.1016/j.bbamem.2020.183301. Epub 2020 Apr 30.

Abstract

Mutation-induced transformations of conductivity and selectivity in NaChBac bacterial channels are studied experimentally and interpreted within the framework of ionic Coulomb blockade (ICB), while also taking account of resonant quantised dehydration (QD) and site protonation. Site-directed mutagenesis and whole-cell patch-clamp experiments are used to investigate how the fixed charge Qf at the selectivity filter (SF) affects both valence selectivity and same-charge selectivity. The new ICB/QD model predicts that increasing ∣Qf∣ should lead to a shift in selectivity sequences toward larger ion sizes, in agreement with the present experiments and with earlier work. Comparison of the model with experimental data leads to the introduction of an effective charge Qf at the SF, which was found to differ between Aspartate and Glutamate charged rings, and also to depend on position within the SF. It is suggested that protonation of the residues within the restricted space of the SF is important in significantly reducing the effective charge of the EEEE ring. Values of Qf derived from experiments on divalent blockade agree well with expectations based on the ICB/QD model and have led to the first demonstration of ICB oscillations in Ca2+ conduction as a function of the fixed charge. Preliminary studies of the dependence of Ca2+ conduction on pH are qualitatively consistent with the predictions of the model.

Keywords: Ion channel selectivity; Ionic coulomb blockade; Voltage-gated sodium and calcium channels; Whole-cell patch clamp.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence / genetics*
  • Aspartic Acid / chemistry
  • Calcium / metabolism
  • Glutamic Acid / chemistry
  • Ionic Liquids / chemistry*
  • Ions / chemistry
  • Mutagenesis, Site-Directed
  • Patch-Clamp Techniques
  • Sodium Channels / chemistry*
  • Sodium Channels / genetics

Substances

  • Ionic Liquids
  • Ions
  • Sodium Channels
  • Aspartic Acid
  • Glutamic Acid
  • Calcium