A molecular dynamics approach on the Y393C variant of protein disulfide isomerase A1

Chem Biol Drug Des. 2020 Dec;96(6):1341-1347. doi: 10.1111/cbdd.13700. Epub 2020 Jul 9.

Abstract

Human protein disulfide isomerase A1 (PDIA1) shows both catalytic (i.e., oxidoreductase) and non-catalytic (i.e., chaperone) activities and plays a crucial role in the oxidative folding of proteins within the endoplasmic reticulum. PDIA1 dysregulation is a common trait in numerous pathophysiological conditions, including neurodegenerative disorders and cancerous diseases. The 1178A>G mutation of the human PDIA1-encoding gene is a non-synonymous single nucleotide polymorphism detected in patients with Cole-Carpenter syndrome type 1 (CSS1), a particularly rare bone disease. In vitro studies showed that the encoded variant (PDIA1 Y393C) exhibits limited oxidoreductase activity. To gain knowledge on the structure-function relationship, we undertook a molecular dynamics (MD) approach to examine the structural stability of PDIA1 Y393C. Results showed that significant conformational changes are the structural consequence of the amino acid substitution Tyr>Cys at position 393 of the PDIA1 protein. This structure-based study provides further knowledge about the molecular origin of CCS1.

Keywords: chemical biology; molecular dynamics; protein disulfide isomerase.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Craniosynostoses / genetics
  • Endoplasmic Reticulum / metabolism
  • Eye Abnormalities / genetics
  • Humans
  • Hydrocephalus / genetics
  • Molecular Dynamics Simulation
  • Osteogenesis Imperfecta / genetics
  • Oxidation-Reduction
  • Procollagen-Proline Dioxygenase / chemistry*
  • Procollagen-Proline Dioxygenase / genetics*
  • Protein Disulfide-Isomerases / chemistry*
  • Protein Disulfide-Isomerases / genetics*

Substances

  • Procollagen-Proline Dioxygenase
  • P4HB protein, human
  • Protein Disulfide-Isomerases

Supplementary concepts

  • Cole Carpenter syndrome