CRISPR/Cas Derivatives as Novel Gene Modulating Tools: Possibilities and In Vivo Applications

Int J Mol Sci. 2020 Apr 25;21(9):3038. doi: 10.3390/ijms21093038.

Abstract

The field of genome editing started with the discovery of meganucleases (e.g., the LAGLIDADG family of homing endonucleases) in yeast. After the discovery of transcription activator-like effector nucleases and zinc finger nucleases, the recently discovered clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR associated proteins (Cas) system has opened a new window of applications in the field of gene editing. Here, we review different Cas proteins and their corresponding features including advantages and disadvantages, and we provide an overview of the different endonuclease-deficient Cas protein (dCas) derivatives. These dCas derivatives consist of an endonuclease-deficient Cas9 which can be fused to different effector domains to perform distinct in vitro applications such as tracking, transcriptional activation and repression, as well as base editing. Finally, we review the in vivo applications of these dCas derivatives and discuss their potential to perform gene activation and repression in vivo, as well as their potential future use in human therapy.

Keywords: CRISPR/Cas; dCas9 derivatives; genome editing; transcriptional regulation.

Publication types

  • Review

MeSH terms

  • Bacterial Proteins / metabolism*
  • CRISPR-Associated Protein 9 / metabolism
  • CRISPR-Cas Systems*
  • Chromatin / ultrastructure
  • DNA / metabolism
  • Endodeoxyribonucleases / metabolism*
  • Endonucleases / metabolism
  • Epigenomics / methods*
  • Gene Editing / methods*
  • Gene Transfer Techniques
  • Green Fluorescent Proteins / analysis
  • Green Fluorescent Proteins / genetics
  • Optical Imaging
  • RNA, Guide, CRISPR-Cas Systems / genetics
  • Recombinant Fusion Proteins / analysis
  • Substrate Specificity
  • Telomere / ultrastructure
  • Transcription Activator-Like Effector Nucleases / metabolism
  • Transcription Activator-Like Effectors / metabolism
  • Transcription, Genetic
  • Zinc Fingers

Substances

  • Bacterial Proteins
  • Chromatin
  • RNA, Guide, CRISPR-Cas Systems
  • Recombinant Fusion Proteins
  • Transcription Activator-Like Effectors
  • enhanced green fluorescent protein
  • Green Fluorescent Proteins
  • DNA
  • CRISPR-Associated Protein 9
  • Cas12a protein
  • Endodeoxyribonucleases
  • Endonucleases
  • Transcription Activator-Like Effector Nucleases