Crystal structure of a novel fold protein Gp72 from the freshwater cyanophage Mic1

Proteins. 2020 Sep;88(9):1226-1232. doi: 10.1002/prot.25896. Epub 2020 May 15.

Abstract

Cyanophages, widespread in aquatic systems, are a class of viruses that specifically infect cyanobacteria. Though they play important roles in modulating the homeostasis of cyanobacterial populations, little is known about the freshwater cyanophages, especially those hypothetical proteins of unknown function. Mic1 is a freshwater siphocyanophage isolated from the Lake Chaohu. It encodes three hypothetical proteins Gp65, Gp66, and Gp72, which share an identity of 61.6% to 83%. However, we find these three homologous proteins differ from each other in oligomeric state. Moreover, we solve the crystal structure of Gp72 at 2.3 Å, which represents a novel fold in the α + β class. Structural analyses combined with redox assays enable us to propose a model of disulfide bond mediated oligomerization for Gp72. Altogether, these findings provide structural and biochemical basis for further investigations on the freshwater cyanophage Mic1.

Keywords: crystal structure; freshwater cyanophage; hypothetical protein; oligomerization; redox.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacteriophages / chemistry*
  • Bacteriophages / genetics
  • Bacteriophages / metabolism
  • Binding Sites
  • Cloning, Molecular
  • Crystallography, X-Ray
  • Cyanobacteria / virology*
  • Disulfides / chemistry*
  • Disulfides / metabolism
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Fresh Water / microbiology
  • Fresh Water / virology
  • Gene Expression
  • Genetic Vectors / chemistry
  • Genetic Vectors / metabolism
  • Models, Molecular
  • Oxidation-Reduction
  • Protein Binding
  • Protein Conformation, alpha-Helical
  • Protein Conformation, beta-Strand
  • Protein Folding
  • Protein Interaction Domains and Motifs
  • Protein Multimerization
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Sequence Alignment
  • Sequence Homology, Amino Acid
  • Viral Proteins / chemistry*
  • Viral Proteins / genetics
  • Viral Proteins / metabolism

Substances

  • Disulfides
  • Recombinant Proteins
  • Viral Proteins