Achieving pure spin effects by artifact suppression in methyl adiabatic relaxation experiments

J Biomol NMR. 2020 May;74(4-5):223-228. doi: 10.1007/s10858-020-00312-2. Epub 2020 Apr 24.

Abstract

Recent methyl adiabatic relaxation dispersion experiments provide examination of conformational dynamics across a very wide timescale (102-105 s-1) and, particularly, provide insight into the hydrophobic core of proteins and allosteric effects associated with modulators. The experiments require efficient decoupling of 1H and 13C spin interactions, and some artifacts have been discovered, which are associated with the design of the proton decoupling scheme. The experimental data suggest that the original design is valid; however, pulse sequences with either no proton decoupling or proton decoupling with imperfect pulses can potentially exhibit complications in the experiments. Here, we demonstrate that pulse imperfections in the proton decoupling scheme can be dramatically alleviated by using a single composite π pulse and provide pure single-exponential relaxation data. It allows the opportunity to access high-quality methyl adiabatic relaxation dispersion data by removing the cross-correlation between dipole-dipole interaction and chemical shift anisotropy. The resulting high-quality data is illustrated with the binding of an allosteric modulator (G2BR) to the ubiquitin conjugating enzyme Ube2g2.

Keywords: Adiabatic relaxation dispersion; Composite decoupling; Conformational dynamics; Cross-correlation between DD and CSA; Methyl TROSY; Methyl relaxation.

MeSH terms

  • Allosteric Regulation
  • Artifacts*
  • Binding Sites
  • Models, Molecular
  • Nuclear Magnetic Resonance, Biomolecular / methods*
  • Peptide Fragments / chemistry*
  • Peptide Fragments / genetics
  • Peptide Fragments / metabolism
  • Point Mutation
  • Protein Conformation*
  • Protein Folding
  • Protons
  • Receptors, Autocrine Motility Factor / chemistry*
  • Receptors, Autocrine Motility Factor / genetics
  • Recombinant Fusion Proteins / metabolism
  • Thermodynamics
  • Ubiquitin-Conjugating Enzymes / chemistry*
  • Ubiquitin-Conjugating Enzymes / metabolism

Substances

  • G2BR peptide
  • Peptide Fragments
  • Protons
  • Recombinant Fusion Proteins
  • UBE2G2 protein, human
  • Ubiquitin-Conjugating Enzymes
  • AMFR protein, human
  • Receptors, Autocrine Motility Factor