The histone deacetylase complex MiDAC regulates a neurodevelopmental gene expression program to control neurite outgrowth

Elife. 2020 Apr 16:9:e57519. doi: 10.7554/eLife.57519.

Abstract

The mitotic deacetylase complex (MiDAC) is a recently identified histone deacetylase (HDAC) complex. While other HDAC complexes have been implicated in neurogenesis, the physiological role of MiDAC remains unknown. Here, we show that MiDAC constitutes an important regulator of neural differentiation. We demonstrate that MiDAC functions as a modulator of a neurodevelopmental gene expression program and binds to important regulators of neurite outgrowth. MiDAC upregulates gene expression of pro-neural genes such as those encoding the secreted ligands SLIT3 and NETRIN1 (NTN1) by a mechanism suggestive of H4K20ac removal on promoters and enhancers. Conversely, MiDAC inhibits gene expression by reducing H3K27ac on promoter-proximal and -distal elements of negative regulators of neurogenesis. Furthermore, loss of MiDAC results in neurite outgrowth defects that can be rescued by supplementation with SLIT3 and/or NTN1. These findings indicate a crucial role for MiDAC in regulating the ligands of the SLIT3 and NTN1 signaling axes to ensure the proper integrity of neurite development.

Keywords: DNTTIP1; ELMSAN1/MIDEAS; H3K27 acetylation; H4K20 acetylation; HDAC1; SLIT and NETRIN signaling pathways; chromosomes; gene expression; mitotic deacetylase complex MiDAC; mouse; neurite ourgrowth; neuroscience.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cell Differentiation / physiology
  • DNA Methylation / physiology
  • Gene Expression Regulation / physiology*
  • Histone Deacetylases / metabolism*
  • Male
  • Membrane Proteins / metabolism
  • Mice
  • Mice, Inbred C57BL
  • Mice, Knockout
  • Netrin-1 / metabolism
  • Neuronal Outgrowth / physiology*

Substances

  • Membrane Proteins
  • Slit3 protein, mouse
  • Netrin-1
  • Histone Deacetylases

Associated data

  • GEO/GSE131062
  • GEO/GSE55437