Relation Between Crystal Structures of Precursors and Final Products: Example of Vitamin D Intermediates

Molecules. 2020 Apr 14;25(8):1802. doi: 10.3390/molecules25081802.

Abstract

In this paper, we proved that the solid-state structure of vitamin D analog is well represented by the structures of its structural fragments. This is important in predicting the biological activity of vitamin D analogs that are not available in the solid form. The previously published crystal structure of advanced vitamin D intermediate provided additional insights into vitamin D properties. A similar analysis based on simple vitamin D intermediate analogues showed that precursors crystallized in the space groups typical for vitamins D; geometrical parameters were related to the corresponding parameters in the vitamin D analogues; and crystal structures of the basic intermediates and their final products contained similar intermolecular interactions, essential for the infinite hydrogen bond motif observed in the vitamin D analogues. The energy of these interactions is related as shown by theoretical calculations, that is, energy frameworks analysis. Moreover, analysis of the hydrogen bonds motifs revealed a relation between these motifs and the absolute configuration of basic intermediates as well as the space orientation of the exocyclic methylene group in the final structures.

Keywords: energy frameworks; hydrogen bonds; intermolecular interactions.

MeSH terms

  • Crystallography, X-Ray
  • Hydrogen Bonding
  • Models, Molecular*
  • Molecular Conformation
  • Molecular Structure
  • Structure-Activity Relationship
  • Vitamin D / analogs & derivatives*
  • Vitamin D / chemistry*
  • X-Ray Diffraction

Substances

  • Vitamin D