miR-9-1 gene methylation and DNMT3B (rs2424913) polymorphism may contribute to periodontitis

J Appl Oral Sci. 2020 Apr 3:28:e20190583. doi: 10.1590/1678-7757-2019-0583. eCollection 2020.

Abstract

Background: Genetic and epigenetic changes have been associated with periodontitis in various genes; however, little is known about genes involved in epigenetic mechanisms and in oxidative stress.

Objective: This study aims to investigate the association of polymorphisms C677T in MTHFR (rs1801133) and -149C→T in DNMT3B (rs2424913), as well as the methylation profiles of MTHFR, miR-9-1, miR-9-3, SOD1, and CAT with periodontitis. The association between polymorphisms and DNA methylation profiles was also analyzed.

Methodology: The population studied was composed of 100 nonsmokers of both sexes, divided into healthy and periodontitis groups. Genomic DNA was extracted from the epithelial buccal cells, which were collected through a mouthwash. Polymorphism analysis was performed through polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP), while methylation-specific PCR (MSP) or combined bisulfite restriction analysis techniques were applied for methylation analysis.

Results: For DNMT3B, the T allele and the TT genotype were detected more frequently in the periodontitis group, as well as the methylated profile on the miR-9-1 promoter region. There was also a tendency towards promoter region methylation on the CAT sequence of individuals with periodontal disease.

Conclusion: The polymorphism -149C→T in DNMT3B (rs2424913) and the methylated profile of the miR-9-1 promoter region are associated with periodontitis.

MeSH terms

  • Adult
  • Aged
  • Case-Control Studies
  • Catalase / genetics
  • DNA (Cytosine-5-)-Methyltransferases / genetics*
  • DNA Methylation / genetics*
  • DNA Methyltransferase 3B
  • Female
  • Genetic Association Studies
  • Genotype
  • Humans
  • Male
  • Methylenetetrahydrofolate Reductase (NADPH2) / genetics
  • MicroRNAs / genetics*
  • Middle Aged
  • Periodontitis / genetics*
  • Polymerase Chain Reaction
  • Polymorphism, Genetic*
  • Polymorphism, Restriction Fragment Length
  • Superoxide Dismutase-1 / genetics

Substances

  • MIRN92 microRNA, human
  • MicroRNAs
  • Catalase
  • Superoxide Dismutase-1
  • Methylenetetrahydrofolate Reductase (NADPH2)
  • DNA (Cytosine-5-)-Methyltransferases