3D PHOVIS: 3D photoacoustic visualization studio

Seonghee Cho; Jinwoo Baik; Ravi Managuli; Chulhong Kim

doi:10.1016/j.pacs.2020.100168

3D PHOVIS: 3D photoacoustic visualization studio

Photoacoustics. 2020 Mar 10:18:100168. doi: 10.1016/j.pacs.2020.100168. eCollection 2020 Jun.

Authors

Seonghee Cho¹, Jinwoo Baik², Ravi Managuli^{3

4}, Chulhong Kim⁵

Affiliations

¹ School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology (POSTECH), Pohang, 37673, Republic of Korea.
² Department of Creative IT Engineering, Pohang University of Science and Technology (POSTECH), Pohang, 37673, Republic of Korea.
³ Department of Bioengineering, University of Washington, Seattle, WA, 98195, USA.
⁴ Hitachi Healthcare America, Twinsburg, OH, 44087, USA.
⁵ Departments of Creative IT Engineering, Mechanical Engineering, Electrical Engineering, and School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology (POSTECH), Pohang, 37673, Republic of Korea.

Abstract

Photoacoustic (PA) imaging (or optoacoustic imaging) is a novel biomedical imaging method in biological and medical research. This modality performs morphological, functional, and molecular imaging with and without labels in both microscopic and deep tissue imaging domains. A variety of innovations have enhanced 3D PA imaging performance and thus has opened new opportunities in preclinical and clinical imaging. However, the 3D visualization tools for PA images remains a challenge. There are several commercially available software packages to visualize the generated 3D PA images. They are generally expensive, and their features are not optimized for 3D visualization of PA images. Here, we demonstrate a specialized 3D visualization software package, namely 3D Photoacoustic Visualization Studio (3D PHOVIS), specifically targeting photoacoustic data, image, and visualization processes. To support the research environment for visualization and fast processing, we incorporated 3D PHOVIS onto the MATLAB with graphical user interface and developed multi-core graphics processing unit modules for fast processing. The 3D PHOVIS includes following modules: (1) a mosaic volume generator, (2) a scan converter for optical scanning photoacoustic microscopy, (3) a skin profile estimator and depth encoder, (4) a multiplanar viewer with a navigation map, and (5) a volume renderer with a movie maker. This paper discusses the algorithms present in the software package and demonstrates their functions. In addition, the applicability of this software to ultrasound imaging and optical coherence tomography is also investigated. User manuals and application files for 3D PHOVIS are available for free on the website (www.boa-lab.com). Core functions of 3D PHOVIS are developed as a result of a summer class at POSTECH, "High-Performance Algorithm in CPU/GPU/DSP, and Computer Architecture." We believe our 3D PHOVIS provides a unique tool to PA imaging researchers, expedites its growth, and attracts broad interests in a wide range of studies.

Keywords: 3D imaging; 3D scan-conversion; Rendering; Skin detection; Visualization; Volume imaging; Volume mosaic.