Characterization of a recombinant l-ribose isomerase from Mycetocola miduiensis and its application for the production of l-ribulose

Enzyme Microb Technol. 2020 Apr:135:109510. doi: 10.1016/j.enzmictec.2020.109510. Epub 2020 Jan 13.

Abstract

An enzyme, l-ribose isomerase (l-RI), mostly catalyzes the isomerization of l-ribose and l-ribulose. These so-called rare sugars are essential for the treatment of cancer and other viral diseases. In the present study, l-ribose isomerase produced from a bacterium, Mycetocola miduiensis (Mm-LRIse), by using l-ribose as a carbon source. The recombinant l-ribose isomerase gene was cloned and overexpressed from M. miduiensis and purified with an exclusive band of 32 kDa by nickel-affinity chromatography. This gene possessed 267 amino acids protein having an estimated molecular weight of 29,568.17 Da. The native molecular weight of Mm-LRIse estimated by HPLC was 134.84 kDa. The recombinant l-ribose isomerase was highly active in sodium phosphate (50 mM) buffer at 40 °C and pH 7.5, showing the specific activity up to 47.40 U mg-1. Mm-LRIse showed no significant enhancement in activity with metallic ions except Mn2+ and Co2+. The values of Km, Kcat, Kcat/Km and Vmax of Mm-LRIse against l-ribose substrate were 42.48 mM, 9259.26 min-1, 217.43 min-1 mM-1, and 277.78 U mg-1 respectively. At equilibrium, the l-ribulose transformation rate was nearly 32 % (6.34 g L-1) using 20 g L-1 of l-ribose. The results revealed that the Mm-LRIse enzyme has a potential for L-ribulose production from l-ribose.

Keywords: Characterization; Mycetocola miduiensis; Purification; l-Ribose isomerase; l-ribose; l-ribulose.

MeSH terms

  • Actinobacteria / enzymology*
  • Actinobacteria / genetics
  • Aldose-Ketose Isomerases / chemistry*
  • Aldose-Ketose Isomerases / genetics
  • Aldose-Ketose Isomerases / metabolism
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Cloning, Molecular
  • Enzyme Stability
  • Kinetics
  • Pentoses / chemistry
  • Pentoses / metabolism*
  • Ribose / metabolism
  • Substrate Specificity

Substances

  • Bacterial Proteins
  • Pentoses
  • ribulose
  • Ribose
  • Aldose-Ketose Isomerases
  • ribose isomerase