Multi-omic analysis reveals HIP-55-dependent regulation of cytokines release

Biosci Rep. 2020 Mar 27;40(3):BSR20200298. doi: 10.1042/BSR20200298.

Abstract

HIP-55 (HPK1 [hematopoietic progenitor kinase 1] -interacting protein of 55 kDa) contains an actin-depolymerizing factor homology (ADF-H) domain at the N-terminus and a src homology 3 (SH3) domain at the C-terminus, which plays an important role in the T cell receptor (TCR) and B-cell receptor (BCR) signaling and immune system. In our previous studies, HIP-55 was found to be highly expressed in several types of tumors and function as a novel oncogenic signaling hub that regulates tumor progression and metastasis through defined functional domains, actin-binding and SH3 modules. However, the wider functions and mechanisms of HIP-55 are still unclear. Here, multi-omic analysis revealed that one of the main biofunctions of HIP-55 is the regulation of cytokines release. Furthermore, to investigate the role of HIP-55 in the cytokine production, a series Cytokine Antibody Arrays were performed to detect differentially expressed cytokines between control and HIP-55 knockdown cells. A total of 97 differentially expressed cytokines were identified from 300 cytokines in A549 cell. Bioinformatics analysis showed these differentially cytokines were mainly enriched in cancer signal pathways and IL-6 is the most critical hub in the integrated network. Analysis of RNAseq data from lung cancer patients showed that there is a strong negative correlation between HIP-55 and interleukin-6 (IL-6) in samples from lung adenocarcinoma patients. Our data indicated that HIP-55 may participate in cancer progression and metastasis via regulating cytokines release.

Keywords: Bioinformatics; Cytokine; HIP-55; IL-6; Microarray.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • A549 Cells
  • Adaptor Proteins, Signal Transducing / metabolism
  • Computational Biology / methods
  • Cytokines / immunology
  • Cytokines / metabolism*
  • Gene Knockdown Techniques / methods
  • Humans
  • Interleukin-6 / immunology
  • Microfilament Proteins / genetics
  • Microfilament Proteins / metabolism*
  • Microfilament Proteins / physiology*
  • Phosphorylation
  • Protein Binding
  • Signal Transduction / immunology
  • src Homology Domains / genetics
  • src Homology Domains / physiology*

Substances

  • Adaptor Proteins, Signal Transducing
  • Cytokines
  • DBNL protein, human
  • Interleukin-6
  • Microfilament Proteins