Microbulbifer harenosus sp. nov., an alginate-degrading bacterium isolated from coastal sand

Int J Syst Evol Microbiol. 2020 Mar;70(3):1639-1643. doi: 10.1099/ijsem.0.003945.

Abstract

A Gram-stain-negative, aerobic, rod-shaped bacterium with peritrichous flagella, designated strain HB161719T, was isolated from coastal sand collected from Tanmen Port in Hainan, PR China. The isolate was found to grow with 2-11 % (w/v) NaCl, at 15-45 °C and pH 6.0-10.0, with an optima of 2-3 % NaCl, 37 °C and pH 7.0, respectively. Chemotaxonomic analysis showed that Q-8 was detected as the sole respiratory quinone and that iso-C15 : 0 and summed features 3, 8 and 9 were the major cellular fatty acids. The G+C content of the genomic DNA was 58.2 mol%. Analysis of the 16S rRNA gene sequence of the strain showed an affiliation with the genus Microbulbifer, sharing 98.7, 98.4, 97.8 and 97.8 % sequence similarities to the closest relatives of Microbulbifer okinawensis ABABA23T, Microbulbifer pacificus SPO729T, Microbulbifer taiwanensis CC-LN1-12T and Microbulbifer gwangyangensis GY2T, respectively. Low DNA-DNA hybridization values showed that it formed a distinct genomic species. The combined phenotypic and molecular features supported that strain HB161719T represents a novel species of the genus Microbulbifer, for which the name Microbulbifer harenosus sp. nov. is proposed. The type strain is HB161719T (=CGMCC 1.13584T=JCM 32688T).

Keywords: 16S rRNA gene; Microbulbifer harenosus sp. nov.; alginate-degrading; polyphasic taxonomy.

MeSH terms

  • Alginates / metabolism
  • Alteromonadaceae / classification*
  • Alteromonadaceae / isolation & purification
  • Bacterial Typing Techniques
  • Base Composition
  • China
  • DNA, Bacterial / genetics
  • Fatty Acids / chemistry
  • Nucleic Acid Hybridization
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Sand / microbiology*
  • Sequence Analysis, DNA
  • Ubiquinone / chemistry

Substances

  • Alginates
  • DNA, Bacterial
  • Fatty Acids
  • RNA, Ribosomal, 16S
  • Sand
  • Ubiquinone
  • ubiquinone 8