Characterization of a G9 group A rotavirus reassortant strain detected in Jinzhou, China, in 2018-2019

Arch Virol. 2020 Apr;165(4):977-983. doi: 10.1007/s00705-020-04563-0. Epub 2020 Feb 24.

Abstract

A novel rotavirus A (RVA) strain (JZ) was detected in RVA-positive stool specimens from three pediatric patients in Jinzhou, Liaoning Province, in 2018-2019. The electrophoresis pattern of the JZ strain showed a long electropherotype. The genomic constellation G9-P[8]-I1-R1-C1-M1-A1-N1-T1-E2-H1 was detected, suggesting that a new inter-genogroup reassortment had occurred. Whole-genome sequencing showed that the JZ isolates were identical to each other. Phylogenetic analysis revealed that VP7 and VP4 clustered in lineages G9-VI and P[8]-3, respectively. JZ strain-specific amino acid substitutions were detected in VP7, VP4 and NSP4. This study provides information on the epidemiology and characteristics of G9 strains circulating in China.

MeSH terms

  • China
  • Genome, Viral
  • Humans
  • Phylogeny
  • Reassortant Viruses / classification
  • Reassortant Viruses / genetics
  • Reassortant Viruses / isolation & purification*
  • Rotavirus / classification
  • Rotavirus / genetics*
  • Rotavirus / isolation & purification*
  • Rotavirus Infections / virology*
  • Viral Proteins / genetics

Substances

  • Viral Proteins