Inflammatory bowel disease: between genetics and microbiota

Mol Biol Rep. 2020 Apr;47(4):3053-3063. doi: 10.1007/s11033-020-05318-5. Epub 2020 Feb 21.

Abstract

Inflammatory bowel disease (IBD) is a chronic relapsing inflammatory disease that can involve any part of the gastrointestinal tract. It includes two main disorders: Crohn's disease (CD) and Ulcerative colitis (UC). CD and UC often share a similar clinical presentation; however, they affect distinct parts of the GI Tract with a different gut wall inflammatory extent. Ultimately, IBD seems to emanate from an uncontrollably continuous inflammatory process arising against the intestinal microbiome in a genetically susceptible individual. It is a multifactorial disease stemming from the impact of both environmental and genetic components on the intestinal microbiome. Furthermore, IBD genetics has gained a lot of attention. Around 200 loci were identified as imparting an increased risk for IBD. Few of them were heavily investigated and determined as highly linked to IBD. These genes, as discussed below, include NOD2, ATG16L1, IRGM, LRRK2, PTPN2, IL23R, Il10, Il10RA, Il10RB, CDH1 and HNF4α among others. Consequently, the incorporation of a genetic panel covering these key genes would markedly enhance the diagnosis and evaluation of IBD.

Keywords: Bowel; Colitis; Crohn’s; Gut; Inflammatory; Microbiota.

Publication types

  • Review

MeSH terms

  • Colitis / genetics
  • Colitis / microbiology
  • Colitis, Ulcerative / genetics
  • Colitis, Ulcerative / microbiology
  • Crohn Disease / genetics
  • Crohn Disease / microbiology
  • Gastrointestinal Microbiome / genetics*
  • Gastrointestinal Microbiome / physiology
  • Genetic Predisposition to Disease / genetics
  • Genome-Wide Association Study
  • Humans
  • Inflammatory Bowel Diseases / genetics*
  • Inflammatory Bowel Diseases / microbiology*
  • Inflammatory Bowel Diseases / physiopathology
  • Microbiota / genetics
  • Microbiota / immunology