Integrative analyses identify a DNA damage repair gene signature for prognosis prediction in lower grade gliomas

Future Oncol. 2020 Mar;16(8):367-382. doi: 10.2217/fon-2019-0764. Epub 2020 Feb 17.

Abstract

Background: The DNA damage repair (DDR) pathways play important roles for regulating cancer progression and therapeutic response. IDH mutations, well-known prognosis biomarkers for glioma, lead to hypermethylation of tumor cells and affect genes' expression. Whether IDH mutations affect glioma prognosis through influencing the expression of DDR genes remains unclear. Methods: A total of 272 DDR genes were selected for differential expression and survival analysis. The identified genes were then utilized to construct the prognosis predicting model. Results: PARPBP, PLK3, POLL and WEE1 were found differential expressed between IDH mutations carriers and wild-type carriers, and were associated with survival of low grade glioma (LGG) patients. The predicting algorithm can predicts the prognosis of LGG patients. Conclusion: IDH mutations may affect LGG prognosis through regulation of DDR pathways.

Keywords: DDR; IDH mutation; TMZ; lower grade gliomas; prognosis.

MeSH terms

  • Alleles
  • Biomarkers, Tumor
  • DNA Damage*
  • DNA Methylation
  • DNA Repair*
  • Female
  • Gene Expression Profiling*
  • Gene Expression Regulation, Neoplastic
  • Glioma / genetics*
  • Glioma / mortality*
  • Glioma / pathology
  • Humans
  • Male
  • Mutation
  • Neoplasm Grading
  • Neoplasm Staging
  • Prognosis
  • Proportional Hazards Models

Substances

  • Biomarkers, Tumor