Fluorescence-based high-throughput screening system for R-ω-transaminase engineering and its substrate scope extension

Appl Microbiol Biotechnol. 2020 Apr;104(7):2999-3009. doi: 10.1007/s00253-020-10444-y. Epub 2020 Feb 17.

Abstract

ω-Transaminase (ω-TA) is an attractive alternative to metal catalysts for the stereoselective amination of prochiral ketones. The narrow substrate scope of an R-ω-transaminase from Mycobacterium vanbaalenii (MvTA) limits its application in R-amine synthesis. A fluorescence-based TA activity screening system was developed to extend its substrate scope. The reactions were conducted in microtiter plates (MTPs) and displayed low background interference, high sensitivity (μM magnitude), and a wide dynamic range (ɀ-factor > 0.9). A KnowVolution campaign was performed on this enzyme, and screening ~ 8000 clones with this fluorescence-based screening system resulted in two beneficial substitutions (G68Y and F129A) and three improved variants (M3, M4, and M5). The best variant, MvTA M5 (WT+G68Y+F129A), achieved the highest catalytic efficiency (toward fluorogenic substrate NMA) which was 3.2-fold higher than that of the WT enzyme. MvTA M5 exhibited significantly enhanced activity toward six different prochiral ketones with e.e. > 99% (R). The specific activity of MvTA M5 was more than 100 times higher than that of the WT enzyme toward acetonaphthone (M5: 8.1 U/mg, WT: ~ 0.07 U/mg), and it showed the highest activity on acetonaphthone, p-ethylacetophenone, and phenylacetone.

Keywords: Chiral amine; Directed evolution; High-throughput screening; ω-Transaminase.

MeSH terms

  • Amines / metabolism
  • Amino Acid Substitution
  • Directed Molecular Evolution
  • Enzyme Stability
  • Fluorescence
  • High-Throughput Screening Assays / methods*
  • Ketones / metabolism
  • Kinetics
  • Mycobacteriaceae / enzymology
  • Mycobacteriaceae / genetics
  • Mycobacteriaceae / metabolism
  • Protein Engineering
  • Substrate Specificity
  • Transaminases / genetics*
  • Transaminases / metabolism*

Substances

  • Amines
  • Ketones
  • Transaminases

Supplementary concepts

  • Mycolicibacterium vanbaalenii