Exome sequencing identifies the first genetic determinants of sirenomelia in humans

Hum Mutat. 2020 May;41(5):926-933. doi: 10.1002/humu.23998. Epub 2020 Mar 1.

Abstract

Sirenomelia is a rare severe malformation sequence of unknown cause characterized by fused legs and severe visceral abnormalities. We present a series of nine families including two rare familial aggregations of sirenomelia investigated by a trio-based exome sequencing strategy. This approach identified CDX2 variants in the two familial aggregations, both fitting an autosomal dominant pattern of inheritance with variable expressivity. CDX2 is a major regulator of caudal development in vertebrate and mouse heterozygotes are a previously described model of sirenomelia. Remarkably, the p.(Arg237His) variant has already been reported in a patient with persistent cloaca. Analysis of the sporadic cases revealed six additional candidate variants including a de novo frameshift variant in the genetically constrained NKD1 gene, encoding a known interactor of CDX2. We provide the first insights for a genetic contribution in human sirenomelia and highlight the role of Cdx and Wnt signaling pathways in the development of this disorder.

Keywords: CDX2; Sirenomelia; caudal dysgenesis; de novo mutation; exome sequencing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adaptor Proteins, Signal Transducing / genetics
  • Alleles
  • Amino Acid Substitution
  • CDX2 Transcription Factor / genetics
  • Calcium-Binding Proteins / genetics
  • Ectromelia / diagnosis*
  • Ectromelia / genetics*
  • Exome Sequencing*
  • Female
  • Genetic Association Studies* / methods
  • Genetic Predisposition to Disease*
  • Genotype
  • Humans
  • Male
  • Pedigree
  • Phenotype

Substances

  • Adaptor Proteins, Signal Transducing
  • CDX2 Transcription Factor
  • CDX2 protein, human
  • Calcium-Binding Proteins
  • NKD1 protein, human