DHX9 interacts with APOBEC3B and attenuates the anti-HBV effect of APOBEC3B

Emerg Microbes Infect. 2020 Feb 14;9(1):366-377. doi: 10.1080/22221751.2020.1725398. eCollection 2020.

Abstract

Hepatitis B virus (HBV) is a partially double-stranded DNA virus that replicates by reverse transcription. We previously demonstrated that the host restriction factor-APOBEC3B (A3B) inhibited HBV replication which was dependent on its deaminase activity during reverse transcription. However, the host factors involved in the process of regulating the anti-HBV function of A3B are less known. In this research, to obtain a comprehensive understanding of the interaction networks of A3B, we conducted coimmunoprecipitation and mass spectrometry to identify A3B-interacting proteins in the presence of HBV. By this approach, we determined that DExD/H-box helicase 9 (DHX9) suppressed the anti-HBV effect of A3B, and this suppression was dependent on their interaction. Although DHX9 did not affect the deamination activity of A3B in vitro assay or the viral DNA editing of A3B in HepG2-NTCP cells that support HBV infection, it inhibited the binding of A3B with pgRNA. These data suggest that DHX9 can interact with A3B and attenuate the anti-HBV efficacy of A3B.Abbreviations: 3D-PCR: differential DNA denaturation PCR; APOBEC3: apolipoprotein B mRNA-editing catalytic polypeptide 3; cccDNA: covalently closed circular DNA; co-IP: coimmunoprecipitation; DDX: DExD-box RNA helicases; HBc: HBV core protein; HBV: hepatitis B virus; HepAD38: HepG2 cell line stably transfected with HBV DNA; HepG2-NTCP: HepG2 cell line stably transfected with Na+/taurocholate cotransporter polypeptide; Huh7: human hepatoma cell line; pgRNA: pregenomic RNA; PPI: protein-protein interactions; RC DNA: relaxed circular DNA.

Keywords: APOBEC3B; DHX9; Hepatitis B virus; attenuate; interaction.

MeSH terms

  • Cytidine Deaminase / metabolism*
  • DEAD-box RNA Helicases / metabolism*
  • HEK293 Cells
  • Hep G2 Cells
  • Hepatitis B / metabolism*
  • Hepatitis B virus / physiology
  • Humans
  • Minor Histocompatibility Antigens / metabolism*
  • Neoplasm Proteins / metabolism*
  • Protein Binding
  • Protein Interaction Mapping
  • RNA, Viral
  • Virus Replication

Substances

  • Minor Histocompatibility Antigens
  • Neoplasm Proteins
  • RNA, Viral
  • APOBEC3B protein, human
  • Cytidine Deaminase
  • DHX9 protein, human
  • DEAD-box RNA Helicases

Grants and funding

This work was supported by the National Key Research and Development Project [grant number 2018YFE0107500], a National Sciences Foundation of China award [grant number NSFC 81471945] and by the Natural Science Foundation Project of CQ CSTC [grant number cstc2018jcyjAX0166] to Yu. H; an National Sciences Foundation of China award [grant number 81661148057] and National Science and Technology Major Project [grant 2017ZX10202203] from Science & Technology Commission of China to A. H.; and the Program for Innovation Team of Higher Education in Chongqing [grant number CXTDX201601015] to N. T.; and the Scientific Research Innovation Project for Postgraduate in Chongqing to Y. C. [grant number CYB18163].