Proposal of a Panel of Genes Identified by miRNA Profiling as Candidate Prognostic Biomarkers in Lung Carcinoids

Neuroendocrinology. 2021;111(1-2):115-122. doi: 10.1159/000506401. Epub 2020 Feb 11.

Abstract

Aim: To validate the prognostic role of a panel of genes previously uncovered by our group to be specific targets of miRNAs differentially expressed in lung carcinoids with aggressive pathological features.

Methods: Four genes, namely, cyclic AMP response element binding protein-1 (CREBP1), activin A receptor type 2B (ACVR2B), LIM homeobox 2 (LHX2), and Krüppel-like factor 12 (KLF12), were identified in a previous study by our group using in silico analysis to be regulated by 3 miRNAs (miR-409-3p, miR-409-5p, and miR-431-5p) that were shown to be downregulated in aggressive lung carcinoids. These genes were analyzed using real-time PCR in a cohort of 102 lung carcinoids. Fifty high-grade lung carcinomas served as control group. Their expression was correlated with the expression of miR-409-3p, miR-409-5p, and miR-431-5p and with clinical pathological parameters and disease-free survival.

Results: The expression of all but CREBP1 gene was significantly different between lung carcinoids and high-grade neuroendocrine carcinomas. ACVR2B and LHX2 were significantly inversely correlated with miR-409-3p and miR-409-5p. High levels of ACVR2B and LHX2 were significantly associated with atypical histotype, high tumor grade, and higher proliferation Ki-67 index (all p < 0.05). Low levels of KLF12 were significantly associated with the presence of necrosis and positive nodal status (all p < 0.05). Finally, low KLF12 expression was associated with shorter disease-free survival in lung carcinoids as a whole and in atypical carcinoids, only (all p < 0.001).

Conclusions: ACVR2B, LHX2, and KFL12 are novel potential biomarkers associated with aggressive features in lung carcinoids.

Keywords: Biomarker; Carcinoid; KLF12; Lung; Prognosis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Activating Transcription Factor 2 / genetics
  • Activin Receptors, Type II / genetics
  • Biomarkers, Tumor / genetics*
  • Carcinoid Tumor / genetics*
  • Carcinoid Tumor / metabolism
  • Carcinoid Tumor / mortality
  • Carcinoid Tumor / pathology
  • Disease-Free Survival
  • Female
  • Gene Expression Profiling*
  • Humans
  • Kruppel-Like Transcription Factors / genetics
  • LIM-Homeodomain Proteins / genetics
  • Lung Neoplasms / genetics*
  • Lung Neoplasms / metabolism
  • Lung Neoplasms / mortality
  • Lung Neoplasms / pathology
  • Male
  • MicroRNAs / metabolism*
  • Middle Aged
  • Prognosis
  • Retrospective Studies
  • Transcription Factors / genetics

Substances

  • ATF2 protein, human
  • Activating Transcription Factor 2
  • Biomarkers, Tumor
  • KLF12 protein, human
  • Kruppel-Like Transcription Factors
  • LHX2 protein, human
  • LIM-Homeodomain Proteins
  • MicroRNAs
  • Transcription Factors
  • ACVR2B protein, human
  • Activin Receptors, Type II