A Closed-Tube Nested Quantitative PCR Assay for Rapid Detection of Intron 22 Inversions in the Factor VIII Gene

Clin Chem. 2020 Feb 1;66(2):373-378. doi: 10.1093/clinchem/hvz021.

Abstract

Background: An inversion of intron 22 in the Factor VIII gene (Inv22) is the causative mutation for 45% of severe hemophilia A cases. Available methods for molecular diagnosis of Inv22 are generally tedious and not ideal for routine clinical use.

Methods: We report here a new method using a single closed-tube nested quantitative PCR (CN-qPCR) for rapid detection of Inv22. This method combines a 12-cycle long-distance PCR (LD-PCR) amplifying the int22h regions, followed by a duplex qPCR targeting two specific regions close to the int22h regions. All reagents were added to a single PCR mixture for the closed-tube assay. Sequential LD-PCR and qPCR was achieved by designing primers at substantially different melting temperatures and optimizing PCR conditions.

Results: Seventy-nine male hemophilia A patients of different disease severity were tested by both the CN-qPCR assay and the standard LD-PCR assay. CN-qPCR successfully made calls for all samples, whereas LD-PCR failed in eight samples. For the 71 samples where both methods made calls, the concordance was 100%. Inv22 was detected in 17 out of the 79 samples. Additionally, CN-qPCR achieved clear separation for 10 female carriers and 10 non-Inv22 females, suggesting the assay may also be useful for molecular diagnosis of female carriers.

Conclusions: This new CN-qPCR method may provide a convenient and accurate F8 Inv22 test suitable for clinical use.

Keywords: Factor VIII; Intron 22 inversion; hemophilia A.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Chromosome Inversion / genetics
  • Factor VIII / analysis
  • Factor VIII / genetics*
  • Factor VIII / metabolism
  • Female
  • Genotype
  • Hemophilia A / diagnosis*
  • Hemophilia A / genetics
  • Humans
  • Introns / genetics
  • Male
  • Real-Time Polymerase Chain Reaction / methods*
  • Sequence Inversion / genetics

Substances

  • F8 protein, human
  • Factor VIII